| Entry |
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| Symbol |
rpoB
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta
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| KO |
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| Organism |
tob Thermodesulfovibrio obliviosus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:tob00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V4D31_07305 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:tob03021]
V4D31_07305 (rpoB)
03400 DNA repair and recombination proteins [BR:tob03400]
V4D31_07305 (rpoB)
Enzymes [BR:tob01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V4D31_07305 (rpoB)
Transcription machinery [BR:tob03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V4D31_07305 (rpoB)
DNA repair and recombination proteins [BR:tob03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V4D31_07305 (rpoB)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(1433088..1437008)
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| AA seq |
1306 aa
MIKPLRERINFGKVPPLVEVPYLLEFQKKSFEKFLQKDVPPEERADEGLQSALNSVFPIS
DYNGTTTIEFISYSVGEPKLSPYECMVKGLTYSVPIKMKVRLNIWDKDEEGRKFLKESRQ
QEVFLGDLPMMTETGSFIINGVERVIVSQLHRSPGVYFAPDRSKSRISGRFLYSARIIPV
RGSWLDFEFDSKDLLYVRIDKRKKLPATIVLKALGYTNEDLLKIFYPIEEIRIKDETFTR
VVSDILMGVRTKIDIVGPDGEIIVKEGSKITRYALKKIKEAGIQEIPISKSEIIGRITLS
DIVDPETGEVIVDSNKEITEEALHRIIAARIQKLDLLFIDNVNYLPSLRETLLTDRVTSK
KDALREIYKKLRPGEPATEEAAEELFYGLFFDPKRYDLSAVGRLKLNQKLGLDIPLEVRV
LTDKDIIEIVKYLLNLRTGKGEVDDIDHLGNRRVRGVGELLENQFRIGLVRMERAIREKM
TITEVETAMPHDVINTKPVMAAIKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLT
RERAGFEVRDVHPTHYGRICPIETPEGPNIGLITSLATYARINEFGFIESPYRKVVNGKV
TNEVHYLSALESENYVIAEATTPVDKDGNIIGETVSARVKGDFKMVSRDEVEYMDVSPKQ
IVSLSASLIPFLENDDANRALMGSNMQRQAVPLIQTEAPVVGTGMELYAARDSGWLVVAK
RAGIVENVDATRIVVRVTEEGGGVDIYNLVKFHKSNQGTCMTQKPIVKVGQTVERGTILA
DGPSMDKGELALGRNVLVAFMPWGGYNFEDAILISERLVKEDVYTSIHIDEFEIECRDTK
LGPEEITREIPNVNEELLKDLDEDGIIRIGAKVKAGDILVGKVTPKGERVYTPEEKLLYA
IFGEKAEDVKESCLYVPPGIEGVVIDVKILTRKGKEKSRRALAIEEEEIKRIERDREDEI
RILKETKASRIRKILQGKIVLEDVRKGEKILCPKGKALTEKVVNLLDVNQLLKLKVEDPD
VKAEVNRVNKEVEQHIKQIYAKYNEKIERIRKGDELPPGVNQIVKVYIAMKRKIQVGDKM
AGRHGNKGVVSMVLPEEDMPYLEDGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKALGL
YVASPVFEGAKEDEIKEMLKKAGFPATGQVTLYDGRTGEPFERPVTVGYMYMLKLHHLVA
DKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKSDDIAG
RTRMYEAIVKGHPVLEPGVPESFNVLVKELQSLCLDVDLLEKKKKT |
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| NT seq |
3921 nt +upstreamnt +downstreamnt
atgataaagcctttaagagagagaataaacttcggaaaggtacctccacttgtggaggta
ccttatcttttagagtttcagaaaaaatcttttgaaaaatttcttcaaaaagatgttcca
ccagaggaaagagcagatgaggggcttcaatcagctttaaacagtgttttcccaataagt
gattacaatggaacaactacaatagagtttatttcctactcagttggagaaccgaagctc
agcccttatgaatgtatggttaagggattaacttattcagttcctataaaaatgaaggtt
cgtttaaatatatgggataaagatgaagagggaaggaagtttctcaaagaatcaagacaa
caggaagtttttcttggcgaccttccaatgatgacagagaccggtagctttataataaac
ggagttgagagagttattgttagccagttgcacaggtctcctggtgtttattttgcgcca
gatagaagtaaaagcagaataagcggaagatttctttactctgcaagaattattcctgta
agaggctcctggcttgattttgagtttgactcaaaggatcttctttatgtgagaattgac
aagagaaaaaaacttccagccaccattgttcttaaggcattgggatatacaaatgaagat
ctgttgaaaattttttaccccatagaggaaataagaattaaagacgaaacctttaccaga
gttgtaagtgatattttgatgggagttagaacaaaaatagatattgttggtcctgatggc
gagattatagtaaaggaaggcagtaaaattacgaggtatgcactgaaaaaaattaaagaa
gcaggaatccaggaaataccaatttcaaaaagtgaaatcatagggagaataactctttca
gatattgttgatcctgaaacaggtgaagttatagttgacagtaataaagagattacagaa
gaagctttacatagaattatagctgccagaatccaaaaattagatctgcttttcatagat
aatgttaactatcttccatcattacgagaaacattgcttactgacagagttaccagcaaa
aaggatgctttaagagaaatatataaaaaattaagaccaggagaacctgctactgaagag
gctgctgaggaactcttttatggattgttttttgatccaaaaagatatgatctttcagca
gtgggaaggcttaaattaaatcagaaattaggacttgacattccacttgaagtgagagtg
cttactgacaaagatattatagaaattgttaaatatcttctcaatctcagaacaggcaaa
ggagaggttgatgatatagatcatcttggaaacagaagagtcagaggagttggtgaactt
cttgaaaatcagttccgtattggattggtgcgaatggaaagagcaattagagagaagatg
acaattacagaggttgaaacagcaatgcctcatgatgttataaatacaaagcctgtaatg
gcagcaattaaagagttttttagcaccagccagctcagtcaatttatggatcaaacaaat
ccattaagtgaaattacacacaaacgcagactcagtgctttaggacctggaggactgacc
cgtgaaagagcaggatttgaagtgcgagatgtccatccaactcattatggaagaatatgt
cctattgagacccctgaaggaccaaacatcggacttataacttctcttgccacttatgca
agaataaatgagtttggttttatagaatctccttacagaaaagtggttaatggaaaagtt
acaaatgaggttcattatttaagtgctcttgaaagtgaaaactatgttattgcagaggca
acaactcctgtagataaagatggaaatattatcggagagactgtttcagcaagagttaag
ggagacttcaaaatggtatcacgcgatgaagtggaatatatggatgtctctccaaaacag
attgttagtttgtctgcttctttaattccttttcttgaaaatgatgatgcaaatagagca
cttatgggttctaatatgcaaagacaggctgttcctttaattcaaactgaagctccagta
gttggtacaggaatggagctttatgcagcaagggacagtggctggcttgttgttgcaaaa
agagcaggaatagtagaaaatgttgatgctacaagaattgttgtcagagttactgaagaa
ggtggtggagttgacatatataatcttgtaaaattccacaagtctaatcaaggaacatgt
atgactcaaaagcctattgttaaagttggtcagactgtagaaagaggaacaattcttgct
gatggtccaagtatggacaaaggtgaacttgctcttggaagaaatgttcttgtggcattc
atgccctggggtggatataactttgaggatgctatcctgatcagtgaaagacttgtgaaa
gaggatgtttatacttccattcacatagatgaatttgagattgaatgtagagacacaaag
cttggtcctgaagagattacaagagaaattccaaatgtcaatgaagagcttcttaaagat
cttgatgaggatggaattataagaataggtgcaaaggtaaaagcaggcgatattcttgtt
ggaaaagtaacgcccaaaggagaaagagtttatactcctgaagaaaagcttctttatgcc
atatttggagaaaaggcagaagatgttaaagaaagctgcctttatgtgcctccaggaatt
gaaggagttgttattgatgtaaaaattttaacaagaaaaggaaaggaaaaatctcggaga
gcccttgctatagaagaggaagagataaaaagaatagaaagagacagagaagatgaaata
agaattcttaaagaaacaaaggcaagcagaatcagaaaaatacttcagggtaaaattgtt
cttgaggatgttcgtaaaggtgaaaaaatcttatgcccaaagggaaaagcacttacagag
aaagttgttaatcttcttgatgtaaatcaactactcaaattgaaggtagaagatccagat
gttaaggcagaagtaaacagagttaataaagaagtagagcaacatataaagcagatttat
gcaaaatacaatgaaaaaattgaaagaatccgtaagggagatgagcttcctcctggtgtc
aatcagatagttaaagtttacattgcaatgaaaagaaaaattcaggttggagacaaaatg
gcaggaaggcacggaaataaaggcgttgtctctatggttctgcctgaagaggatatgcca
tatcttgaagatggaacacctgttgacattgtgcttaatcccttaggtgttccttcaaga
atgaatgtagggcagattcttgaaactcatttaggattggctgctaaggctcttggtctt
tatgtggcaagccctgtttttgaaggtgcaaaagaagatgagataaaagagatgcttaag
aaagcagggtttccagcaacaggtcaggtaactctttatgatggaagaacaggtgagcct
tttgagaggcctgttacagttggctatatgtatatgctcaaactgcatcatcttgttgca
gataaaattcatgctcgttccataggtccgtattcccttgtaacacagcaacctcttgga
ggtaaagcacagtttggtggccagagacttggagaaatggaagtatgggctttggaagca
tatggagcagcttatacacttcaggagtttttaactgtaaaaagcgatgatatagcaggt
agaacccgcatgtatgaggctattgttaaaggacatcctgtactggaaccgggagttcct
gagtcattcaatgttttagtaaaagagctccagagtctttgtcttgatgttgatcttctg
gagaaaaagaaaaaaacttaa |
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