Thermodesulfovibrio obliviosus: V4D31_08070
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Entry
V4D31_08070 CDS
T10572
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tob Thermodesulfovibrio obliviosus
Brite
KEGG Orthology (KO) [BR:
tob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tob03016
]
V4D31_08070
Enzymes [BR:
tob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V4D31_08070
Transfer RNA biogenesis [BR:
tob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V4D31_08070
Prokaryotic type
tRNA splicing ligases
V4D31_08070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XCH48286
UniProt:
A0AAU8H0G4
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All DBs
Position
1564168..1565616
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AA seq
482 aa
AA seq
DB search
MPKIEGTERIDQYRIRVPKGFVQGMRTEGIIFVDEILEQELELDSVRQVANVATLPGIVG
KSLAMPDIHTGYGFPIGGVAAFDTEEGIISPGGVGYDINCGVRLLKSNLTRDEIEPRIKE
LVDLLYIHIPSGVGSTGKIKLNYEELKKVARKGAIWAVEQGYGEPDDLQRIESHGCLEGA
DPEVISKKAYERGKDQLGTLGSGNHFLEVQYVAEIYEPEIAEAMGLFKNQVTVMIHTGSR
GFGHQICDDYVREMIQATKKYGIELPDKELACAPFLSKEGQRYFAAMKAAANYAWANRQC
LMHWTREVFLRVFKLSPKELAMSVVYDVAHNIAKEEIHMVNGKKMRVVVHRKGATRAFPK
GHPELPQCYTHIGQPVIIPGDMGRVSFVLIGQDKAMQETFGSTCHGAGRLLSRTQAIKKA
KGRSIKQELANRGIIVKSAGKETLAEEMPEAYKDVSNVVDVVHNAGLAHKVVKLKPMGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaattgaagggacagaaagaatagatcaatacagaatcagagtgccaaaagga
tttgtgcaaggaatgagaaccgaaggaatcatcttcgtagatgaaatccttgaacaggag
cttgagcttgactcagtccgtcaagttgcaaatgtggcaacactgccaggaattgtgggt
aaatctcttgccatgcctgatattcacacaggctatggtttccctattggaggagttgca
gcctttgatacagaagaaggaataatttcaccaggaggtgtcggctacgacatcaactgt
ggtgttagactccttaaaagtaatctaacacgggatgaaatagaacccaggataaaagag
cttgttgatttgctttacatccatattccctctggagttggttcaactggaaaaataaag
cttaactatgaagaacttaaaaaggttgctcgtaaaggtgcaatatgggcagttgagcaa
ggttatggtgagcctgatgaccttcaaagaattgaatcgcacggatgtcttgaaggagca
gaccctgaagttataagtaaaaaagcctatgagcgtggtaaagatcaattaggaactctt
ggttcaggaaatcactttcttgaagttcagtatgtggcagaaatttatgaaccagagatt
gccgaggctatgggattgtttaaaaatcaagttactgtgatgatacatactggttctcgt
ggttttgggcatcagatatgcgatgactatgtaagggagatgatacaggcaacaaagaaa
tatgggatagagcttcctgataaagagcttgcctgtgctccttttctcagcaaagaagga
cagagatattttgcagcaatgaaggcagcagccaattatgcatgggcaaacaggcagtgt
ttaatgcactggacaagagaggtttttcttagagtttttaaactttcaccaaaagagctt
gcaatgagtgttgtctatgatgttgctcacaatattgcaaaagaagagattcatatggta
aatggaaaaaaaatgcgagttgttgttcacagaaaaggtgcaacccgtgcatttccaaaa
gggcatcctgaacttcctcagtgctatactcatattggacagcctgtaattattcctgga
gatatgggaagagtttcctttgttctaatagggcaagacaaagcaatgcaagagaccttt
ggttcaacatgtcatggagctgggagacttctgagtagaacccaagcaataaaaaaggca
aaaggaaggtcgattaagcaggagcttgctaacagaggtataatagttaagtctgctgga
aaagaaactctggcagaggagatgccagaagcttataaagatgtatcaaatgttgttgat
gttgttcacaatgcaggattggctcacaaagttgtaaaattaaaaccaatgggagtgata
aaaggatga
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