Thermosediminibacter oceani: Toce_0111
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Entry
Toce_0111 CDS
T01289
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Toce_0111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
toc03021
]
Toce_0111
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_0111
Enzymes [BR:
toc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Toce_0111
Transcription machinery [BR:
toc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Toce_0111
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Toce_0111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADL06902
UniProt:
D9RZK4
LinkDB
All DBs
Position
115753..119382
Genome browser
AA seq
1209 aa
AA seq
DB search
MVRPVKVGGRTRWSFAKIEEVRDLPYLLEIQKNSYEWFLKEGLREVLQEFSPIEDFTGNM
VLEFLDYSLDNNPKYSVDECKERDVTYAVPLKVRVRLINKETGEVKEQDVFMGDFPLMTE
NGTFIINGAERVIVSQLVRSPGVYFDRQIDKNGRALYMGTIIPNRGAWLEMETDSNEVIY
VRVDRTRKIPITVLLRALGYGTNAQIIELLGEDEKILRTLEKDNTENQEEALLEIYKRLR
PGEPPTVENARALLESLFFDPKRYDLANVGRYKFNKKLRLRNRIVGKIAAENVEDPNTGE
IILKKGEKITRKTAETLESLRINEIKVMVDEDRVVKVIANGYNDGDGPDVFPTEKYITVE
DIVASINYLLNLSYGIGDVDDIDHLGNRRVRSVGELLQNQFRIGLARMERVVKERMTIQD
VDAITPQGLINIRPLVAAIKEFFGSSQLSQFMDQTNPLAELTNKRRLSALGPGGLSRERA
GFEVRDVHYSHYGRMCPIETPEGPNIGLISSLSTYARVNQYGFIETPYRKVDKERGVVTN
EVEYLTADEEEEFIIAQANVPLDEEGRFVQKRVTARYKDDIVVVPAEEVDYMDVSPKQLV
SVATALIPFLEHDDANRALMGANMQRQAVPLITTEAPLVGTGIEWKAALDSGVMIVAKNS
GVVERVTAREIVIRRDSDNGLDVYKVHKFMRSNQGTCINQRPIVKKGDRVEAGQPIADGP
STDHGELALGKNVLVAFMPWEGYNYEDAILISERLVRDDVFTSIHIEQYEAEARDTKLGP
EEITRDIPNVGEDALKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFG
EKAREVRDTSLRVPHGEYGIVVDVKVFSRENGDELPPGVNQLVRVYIAQKRKISEGDKMA
GRHGNKGVISRILPVEDMPYLPDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKALGWH
VATPVFDGATEEEIFECLRKAGLPEDGKIELRDGRTGEPFDKKVTVGYMYMLKLAHLVDD
KIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQELLTVKSDDVMGR
VKTYEAIVKGENVPEPGIPESFKVLIKELQSLCLDVKILSEDAQEIEIKDADEYEETETL
DVNMEGLEDQGETPVKEEEPDEDLEEEEPEEDIYEELSEEDRELTRDLGLDEEDFNGQFD
FDESEIEDY
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggttcgtcccgtaaaagtgggaggacgcacccgctggagtttcgccaagatcgaggaa
gtaagagacctcccttacctgttggagatacagaagaattcatacgagtggtttttaaaa
gaaggtctgagagaagttctgcaggagttttctcccatcgaggattttaccggcaacatg
gtgctggagtttctcgattatagcctcgacaataaccccaagtactcggtggatgagtgt
aaggaaagggacgttacatacgccgttcccctcaaggtccgcgtaaggctgataaataaa
gagacgggcgaggtaaaggaacaggacgtgttcatgggtgacttcccgctcatgactgaa
aacggtacctttataataaacggagccgagagggttatcgtcagccagctcgtgcgttcc
cctggtgtgtacttcgaccggcagatcgacaagaacggcagggccctctacatggggacc
attatccccaaccgcggtgcctggcttgaaatggagaccgattccaacgaggtcatatac
gtgagggtcgacaggacccgaaagatccccataaccgtgctcttaagggctctcggttac
ggaaccaacgcgcaaatcatcgaacttttaggcgaagacgaaaaaatcctcaggacttta
gaaaaggataacactgaaaatcaagaagaggcgctcctcgaaatatacaagaggctgaga
cccggagagccgcccactgtggaaaacgcaagagctctcttggagtcgttgtttttcgat
cccaagcgctatgatcttgcgaacgtgggcaggtacaagttcaacaaaaaactgaggctc
aggaaccgtatcgtagggaaaatagcggcggaaaacgttgaggaccccaacaccggagag
attattctcaaaaaaggtgaaaaaattaccagaaagacagccgaaacccttgagtccctt
agaataaacgagatcaaggtaatggtcgatgaagacagggtcgtaaaagtcatagccaac
ggatacaacgacggcgatggtcccgatgtttttcccacggaaaaatatatcaccgttgaa
gatatagttgcttccataaactacctcctgaatctttcctacggtatcggtgatgtggac
gacatcgaccatttgggcaaccgcagggtgaggtcggtaggcgaacttttgcaaaaccag
ttccgcatagggcttgcccgaatggagcgggtcgtcaaagagcgcatgaccatccaggac
gtggacgccataactccgcagggactcatcaacataaggcccctggtagcagctataaag
gagttcttcggcagcagccagctgtcccagttcatggaccagaccaaccccttggcggag
cttactaacaagagaaggctcagcgccctcgggcccggaggcttgagccgcgagagggcg
ggcttcgaggtaagggacgtacactattcccactacggccgcatgtgtcctatcgagact
cctgaaggccccaacatcgggctcatcagctccctcagcacgtatgcccgggtaaaccag
tacggatttatagagacgccttaccgcaaggtcgacaaagaaagaggcgttgttaccaac
gaagtagaatacctgaccgccgacgaggaagaggaattcatcatagctcaggccaacgtg
cccctggatgaagagggcaggttcgtccaaaaaagggttacggccaggtacaaggacgac
atcgtggtagttccggccgaagaagtcgattacatggacgtatcgccgaaacagctggtc
agcgtagccaccgctctgattcctttcctggaacacgacgacgccaaccgagccctcatg
ggcgctaacatgcagcgccaggcggttccccttataaccacggaagctccgctggtgggt
acgggaatagagtggaaagccgctttagattctggcgtcatgattgtggccaagaattcg
ggcgttgttgaaagggtaacggcaagagagattgtaatccgcagggatagcgacaatggc
cttgatgtgtataaagtgcataaattcatgaggtcaaaccaggggacctgcatcaaccag
aggcctatagtgaaaaagggcgatagggttgaagcgggtcagcccatagccgacggtcca
tccacggaccacggcgaactggcgctgggcaagaacgtgctggtggccttcatgccctgg
gaaggttacaactacgaggacgccatcctgatttcggaacggctggtgagggatgatgtt
ttcacctcgattcacatagagcagtacgaggctgaggcccgggacaccaaactaggcccc
gaggagatcacaagggatatacccaacgtaggcgaggatgccttgaaggacctggacgaa
aggggaatcatccgaataggcgccgaggtccgggccggggacatcctggtgggcaaggtg
actcccaagggcgaaactgaactcaccgccgaggaaaggctgctcagggccatattcgga
gaaaaggcgagggaagtcagggatacttccctcagggttccccacggagagtacggtatc
gtcgttgatgtcaaagtgttcagcagggaaaacggagacgaactgccgccgggagtcaac
caactggtcagagtttacatagcccagaagaggaagatctccgaaggcgacaagatggcc
ggccgccacggaaataagggtgtaatttcaaggatattacccgtggaagacatgccgtat
ctacccgatgggacgccggtagatatcgtgctgaaccccctgggtgtgccttcccgaatg
aacatcggccaggtgctggagacgcatctcggatgggcggcaaaggcgctgggatggcat
gtagccacgccggttttcgacggtgcgaccgaagaagaaatattcgagtgcctcaggaag
gccggtttgcccgaagacggcaagatagaactaagggacgggcgcacgggcgaacccttc
gataaaaaggttacggtgggctacatgtacatgctgaagttggcccacctcgtggatgac
aagatccacgccaggtctacgggtccatactcgttggttacccagcagccgctgggcggt
aaagcccagttcggcggccagaggttcggtgaaatggaagtatgggccctggaggcgtac
ggggcaagctataccttacaggaactcctaacggtgaaatccgacgacgtgatgggccgc
gtaaagacctacgaggctatagtaaagggcgagaacgtgccggaaccggggatacccgaa
tccttcaaggtgcttattaaagaactgcagtccctgtgccttgacgtgaagatactttcc
gaggacgcccaggagatcgagatcaaggacgccgacgaatacgaggagactgaaaccctc
gatgtgaatatggagggtctggaagatcagggagaaacgcctgtaaaagaagaagaaccc
gacgaagacctggaggaagaagaaccggaagaagacatatacgaggaattaagcgaggaa
gacagggaacttacacgggacctgggcttggacgaagaggattttaatggtcaatttgac
ttcgacgagagtgagatagaagattattaa
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