Thermosediminibacter oceani: Toce_0454
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Entry
Toce_0454 CDS
T01289
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
toc
Thermosediminibacter oceani
Pathway
toc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Toce_0454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toc03019
]
Toce_0454
03009 Ribosome biogenesis [BR:
toc03009
]
Toce_0454
04131 Membrane trafficking [BR:
toc04131
]
Toce_0454
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
toc04147
]
Toce_0454
Messenger RNA biogenesis [BR:
toc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Toce_0454
Ribosome biogenesis [BR:
toc03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Toce_0454
Membrane trafficking [BR:
toc04131
]
SNARE
SNARE associated proteins
Others
Toce_0454
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Toce_0454
Exosome [BR:
toc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Toce_0454
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_14
AAA_28
CDC48_2
AAA_33
AAA_2
RNA_helicase
nSTAND3
Mg_chelatase
AAA_7
AAA_18
TsaE
Parvo_NS1
AAA_24
AAA_17
SLFN-g3_helicase
IstB_IS21
nSTAND_NTPase5
NPHP3_N
bpMoxR
AAA_25
ABC_tran
ATPase_2
AAA_19
AAA_11
Sigma54_activat
Zeta_toxin
ResIII
AstA_C
MazE_antitoxin
Rad17
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ADL07231
UniProt:
D9S1F4
LinkDB
All DBs
Position
complement(451422..453623)
Genome browser
AA seq
733 aa
AA seq
DB search
MRNDDADFTVRSVSPDSIAHGVIWQMSAEKSLQFRVCEAEIQDARKGIVRIPAEALKALE
LNPNDVVAITGKRTTVARVLPGFPESCPAGCIQMDGIVRQNAAAGIGEIVVVTPIECERA
KAVVLSPLLPVWQGAEKGSAFLKKSILGRVVIVGDQITISQFSGGDEAFMVEGTAPQGAV
VITRDTIVRFKGADNTDSSRGGVTYEDIGGLAKEVKKIREIVELPLKYPQLFNRLGIEAP
KGILLYGPPGTGKTLIARAIASETEAHFLLVNGPEIMHKYYGESEARLRQVFDEAKKKAP
SIIFLDEIDAIAPRRTEVYGDVEKRVVAQLLALMDGLEARGNVIVLAATNVPDLIDPALR
RPGRFDREILIDVPDQRGRKEILAIHTRGMALAEDVSLEYLAAITHGFVGADLAALCREA
GMHALQRVLENLPPGFPPPVELDLKVTMRDFISALDEVEPSATREFAAELPTARWEDIGG
MTAIKERLQALVQWPLTHPELFKQFGLRPPKGILLYGPPGTGKTLMVRALAGESGINFIP
VNGSLLFSRWRGQAEKILHEVFRKARQASPCLLFFDELDALVPVRRGGEETAGRLVSQFL
LEFDALEEMREVVVIGATNRIDLIDPALLRPGRFDEVLEFPYPDESDRQAIFGIHLGARP
LAADVDLELLALQSEGLTGAEIEAVCRRAAFMAAAEFASRSDASKESGAIRRQHLERALE
EVRKKRDLIPVKG
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacgatgatgcggactttaccgtaagatcagttagtcccgatagtatagcacat
ggggtgatatggcaaatgagtgcagaaaagtccctccagtttagagtttgtgaggcggaa
atccaggacgcacgtaaagggatagttcggataccagccgaggctttgaaggccctggaa
ttaaaccccaacgatgtggtagcgataacgggaaagcgcaccactgttgcccgggtactt
cccggttttcccgagagttgccccgccggctgtattcagatggacgggatcgtaaggcaa
aacgctgccgccggtatcggagaaatcgttgtagtgaccccgattgagtgtgagcgggct
aaagccgtggtcctttcacctcttttgccggtatggcagggtgcggagaaggggagtgct
ttcctcaaaaaaagcatcctgggtcgggtcgtgattgtaggcgatcagataacgatttca
cagttcagcggtggcgatgaagctttcatggtggagggcacggccccgcagggcgctgtt
gttattacgcgcgatacgatcgtgcgctttaaaggtgcggataataccgacagcagcaga
gggggtgtaacctatgaggatatcgggggccttgcaaaagaggtcaaaaaaattcgcgag
attgtcgagctcccgctgaagtatccgcagcttttcaaccggctaggtatcgaggctccc
aagggaattctactgtacggcccccccggcaccggcaagacgctgatcgcccgcgccata
gcttccgagacggaagcccactttttactggtcaatggtccagaaataatgcataagtac
tacggggagagcgaagcgcgcctgcgccaggtgtttgatgaagcgaagaaaaaggcgccc
agcattattttcctggacgagatcgatgccatagctccccggcgcaccgaagtatacggg
gatgtggaaaagcgcgtggttgcccagcttctggcactgatggatggcctggaagcgcgc
ggtaatgtcatcgtgctggcggctaccaatgtgccggatttgatcgatccggcgttgcgc
cgtcccggccggtttgatcgggagatccttatcgatgtgcccgaccaacgcggccggaag
gagatcctggcgattcatacccgcggtatggccctggcggaggacgtttctctggaatac
ctggctgccatcacccacgggtttgtcggtgcagacctggccgctctgtgcagggaggcg
ggcatgcacgccctgcagcgggtgctggaaaatttaccacccggttttcctcctcctgtc
gaactggaccttaaagtgaccatgcgcgactttatcagtgccttggacgaagtagaacct
tcggcgacccgggaatttgccgccgaacttcccacagcccgctgggaagatataggaggt
atgacggcaattaaagagcgcctgcaggcactggtccagtggcctttgacccaccccgag
ctattcaaacagttcgggttacgaccgcccaaaggcatccttctatacggccccccgggt
accggcaagactttaatggtgcgggccctggccggagaaagcggcataaactttataccc
gtaaacggttccctcctcttttcccgctggcggggtcaggcggaaaaaatcctccacgaa
gtttttcgcaaggctcgccaagcttcgccgtgcctgttatttttcgatgaactggacgcc
ctcgtcccggtgcgccgcggcggcgaggaaacagccggccgcctggtgtcccagtttctg
ctggagttcgatgctctcgaagaaatgcgcgaggtggtggtcataggggctacgaaccgg
attgatcttatcgaccccgctctgctgcgcccggggcgtttcgacgaggtactggagttt
ccctaccccgatgagtctgatcggcaggctatttttggcatccacctgggcgcccggccc
ttggctgcggatgtggacctggagcttttggccctgcagtcggaaggcctcaccggagcc
gaaatcgaagcagtctgccggcgggcagctttcatggcagcagcagaatttgcatcccga
agtgatgcgtcaaaggaaagcggagccatccggagacagcacctggaacgggcattggag
gaagtgcgtaaaaaacgggacttgatcccggtaaaagggtaa
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