Thermosediminibacter oceani: Toce_1227
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Entry
Toce_1227 CDS
T01289
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Toce_1227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toc03019
]
Toce_1227
Messenger RNA biogenesis [BR:
toc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Toce_1227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ADL07983
UniProt:
D9S3K6
LinkDB
All DBs
Position
complement(1198004..1199671)
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AA seq
555 aa
AA seq
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MSKNEQKLLIIPLGGIGEIGKNMTVIQYEKEILVIDAGLMFPEEEMLGVDMVIPDITYLV
ENKDFIKGIIITHGHEDHIGALPYVLQQINAPLYGTRLTMGLVEVKLKETKFKKNIAINV
IKPPASVKIGNFTVDFFRVNHSIPDSVGVAIYTPVGTVCHTGDFKFDQTPVDGKIADLHK
LAELGTKGVLALLSDSTNAERQGYTMSERVVGSTIEEIFGRAKGRIIVATFASNIHRIQQ
VIDAAFKFGRKVAVVGRSMVNVVNIALNLGYLSIPKDLLMELDDIQKLPNEKVVIITTGS
QGEPMSALTRMAMCEHKKVEIIPGDTVLIAATPIPGNEKFVARTIDHLFKQGAEVIYEAI
SGVHVSGHASQEELKLMLNLVKPKYFIPVHGEYRHLIHHANLAKEVGIPEGNIFIPENGR
IVELTKDSARLAGKVTAGKVMVDGLGVGDVGNIVLRDRKQLAQDGILIVVVTIDKETTEV
VAGPDIISRGFVYVRESEVLMEQSREIVRQALRKCQEEEITEWSTIKSQVRDTLGKFLFE
QTRRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaaaaatgagcagaagcttttaatcatacctttgggtggaataggcgaaataggc
aaaaatatgacagttatacagtacgaaaaagaaatattggttattgatgccggtctcatg
tttcctgaagaagagatgcttggtgtcgacatggtaataccggatattacgtacctggtg
gaaaataaggattttattaaaggaattatcataacgcacggccacgaagatcatataggc
gccctgccgtacgtgctacagcagataaatgcccctttatacggcaccaggcttacaatg
ggcctcgttgaagtcaaattaaaagagaccaaattcaaaaagaatatcgccattaatgta
ataaaaccgccagcatcggttaaaataggcaatttcaccgtagattttttcagggtaaac
cacagcatacccgattctgtaggagtagccatctatacaccggtaggtaccgtctgccat
acgggagattttaaattcgatcagactccggttgacggtaaaatcgcagacttacacaaa
ctcgccgagctcggcacaaagggtgtactcgcattgttgtctgacagcaccaatgccgaa
cgtcaagggtacaccatgtccgaaagggttgtgggaagtaccatagaggaaatattcggc
agggcaaagggtagaataatagtcgccaccttcgcctcaaacattcacaggatacagcaa
gtaattgatgccgcctttaaattcggtagaaaggtggctgttgtagggcgcagcatggtc
aacgtggtcaacattgccctgaatttgggatacctttccataccgaaagatctgctaatg
gagctggacgatatacagaagcttccaaatgaaaaagtcgtaataataacaacgggcagc
caaggtgaacccatgtccgcactgacccgaatggcaatgtgcgaacacaaaaaagtggag
ataattcctggagataccgtgctgatagcagcgactccgataccgggtaacgagaaattc
gttgcgaggaccatagatcatctgtttaaacaaggggccgaagtgatatacgaagctata
tccggtgtccacgtctcgggtcatgccagtcaggaagaactgaagctgatgctcaacctg
gtaaagccgaagtattttattcctgtccacggtgaatacaggcatctcatccaccacgcc
aacctggcaaaagaagtgggtataccagaaggaaacatctttatacccgagaatggaagg
atagtagagttaacaaaagattcggcccgactggcgggcaaagttacggctggaaaggtc
atggtcgacggcctcggggtcggcgatgtgggcaacatagtcctgagagacagaaaacag
cttgctcaggatgggattttgatagtggtagtgaccattgacaaggaaacaacggaagtc
gtcgccgggccggatataatctcaagaggtttcgtgtacgtgagggaatcggaggtacta
atggaacagtcgagagagattgtcaggcaagccttgagaaaatgccaggaagaagaaatc
accgaatggtcgacaataaagtctcaggtcagagataccttaggtaaattccttttcgaa
cagacccgcagaaggccgatgattctgcccatcataatggaagtatga
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