Thermosediminibacter oceani: Toce_1242
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Entry
Toce_1242 CDS
T01289
Name
(GenBank) DNA polymerase III catalytic subunit, PolC type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03030
DNA replication
toc03430
Mismatch repair
toc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Toce_1242
03430 Mismatch repair
Toce_1242
03440 Homologous recombination
Toce_1242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
toc03032
]
Toce_1242
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_1242
Enzymes [BR:
toc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Toce_1242
DNA replication proteins [BR:
toc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Toce_1242
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Toce_1242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
DNA_pol3_a_NII
RNase_H_2
DEDDh_C
DNA_pol3_a_NI
HHH_3
DUF655
tRNA_anti_2
SAM_GIDA_C
Motif
Other DBs
NCBI-ProteinID:
ADL07998
UniProt:
D9S3M1
LinkDB
All DBs
Position
complement(1211510..1215757)
Genome browser
AA seq
1415 aa
AA seq
DB search
MTRLGMLLNLSKFGDEEKRLLESTTVKKVAVITSERTVKIELLPEEDLSQDLISRVKQEL
KQKLKGCCAVQLCFSEKIQCAAKDVTEVIQGKWDECLKNLFRKVASARIWMLNSTYEYDR
GTLFIYIEKNGIEYLQKKKCSRIIEEFFQKLGIKLKVLFKEKEQVEYYDISEEDRQLVEA
LLNSDELKTEAPSKDDTPSDMIFGRDVEGEPVPLKEIAGEVKEIIVSGWVFELSCREIKN
DTKLVTFGLTDGTGSLAVKIFASNEKKCAVERIQEGIWVKIRGKVEKNSYSGELELIPLD
IKKIPKPLRSDNSGEKRVELHLHTRYSALDAVCSPKEVIELCKHWGHKAVAFTDHGVVQS
FPEVYEAAKATGIKAIYGLEAYIFDDEFPVIAEPPEGNIDDFVYVVTDIETTGLSLDADE
IIEIGAVKVYRGQIIDRFHSFVNPGRPISSHITNLTGINNAMVSQAPPVKDVMSDFLRFI
GNGIFVAHNAEFDAGFIRRDCKKFGMKFDNKVMDTLNLSALVFPELKNHRLDTIAKKFNI
NMGSHHRAGDDANTTALILIELLKKLKEQGIDDLSMINQVNKKATQYLNSYHAIILVKNS
QGLRDLYKLVSISHLEYFYRHPRIPKSLLKKYREGLIVGSGCEAGELFQSLIYHHSDKDI
ERIVFFYDFLEIQPLQNNKFLIEKGILSNEEKLKEINKRIYQLGKKYNKPVVITGDVHFL
NPEDETYRKILLTVQGYRDNNLDSGLYLKTTEEMLDECRYLGEEAAKEVVIENPNRIADE
IEDGIKPVPDELYPPKIEGADEEIINMTYNRAKEIYGEELPEIVKKRIERELNSIVNNGY
SVIYLIAHKLVKKSLDDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYLCPKCKNSIFPD
NVEGIVGPDLPDKICPVCGCPMKKDGYNIPFEVFMGFEGDKVPDIDLNFSGEYQPIAHKY
TEELFGKNNVFRAGTISTIAEKTAYGFVRAYLEEKRITASEYEIKRLAAGITGVKRTTGQ
HPGGLMVVPKDKEIFEFTPIQYPADDKESGVITTHFDYHSISERLLKLDLLGHDDPTVIK
MLEEETGIDAKKIPLDDRATMAIFSSLEPLGLKPEDVGTTVGTLGVPEFGTRFVRQMLEE
TRPTTFSELVRISGLSHGTDVWLNNAQDLIKNKMATLKEVIATRDDIMIHLIEKGIDHKT
AFTIMEKVRKGKGLKPEEEQILKENGVEQWFIDSCKKIKYMFPKAHAVAYVIMAFRIAYF
KVHYPEAFYATYFTVRADDFDAKLILQGPKKIKEVIEEINKKEKNATPKEKNLLTILEVA
NEMYMRGIQFIPIDLYKSHYSKFIITKEGILPPLNALPGLGLSAAQSIYNERQKGEFASI
EDLRMRTRVTKNVVEILRQSGVLNGLQETNQISLF
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggttgggtatgctgcttaatctgtccaaatttggcgatgaagaaaagcgactg
cttgaaagtacgactgtgaaaaaagtcgccgtaattacgagtgaaagaacagtgaaaatt
gagcttttgccggaggaagacctatctcaggatttgatttctagagttaagcaggagtta
aagcaaaaactaaaagggtgttgtgcggtacaactatgcttttctgagaaaattcagtgt
gcagcgaaggatgttactgaagttattcaggggaaatgggatgaatgtttaaaaaatctt
ttcagaaaggtagcttccgcaagaatatggatgcttaacagtacatatgagtacgataga
ggtactctatttatttatattgagaaaaacggaattgagtatcttcagaagaaaaagtgc
agccgcataattgaggaatttttccaaaaactcggcattaaactgaaagttttatttaaa
gaaaaagaacaggtagagtattacgatatatccgaagaagaccggcagctggttgaagct
ttactaaatagcgatgagctaaaaacagaagccccctcgaaagacgataccccttcggat
atgatctttggcagagatgtggagggggaaccggttccattaaaggaaatagccggtgag
gttaaagaaataatcgtgagcgggtgggtttttgaattatcctgtcgtgaaattaaaaac
gataccaaactggttacttttggactgaccgacggcacaggttccctagcagtaaaaatc
tttgcctcaaacgaaaaaaaatgcgcggtagaaagaatacaagaaggaatctgggtaaaa
attagggggaaagtggaaaagaacagctactccggagagctggaattaatccccctggac
attaagaaaataccaaaacctctgaggtcggacaacagcggtgaaaaaagggtggagtta
catcttcacacaagatacagcgccctggatgcggtttgttccccaaaagaggtcatagaa
ttgtgcaaacactgggggcataaagccgtggcctttaccgaccatggggtagtccagtct
tttcccgaggtttatgaagctgcaaaagcaaccgggatcaaagcgatttacggtttggag
gcctatatattcgacgatgaattcccggtaatagccgagcctcctgaaggaaacatagat
gattttgtatacgtcgtaaccgatattgagaccacaggtctgtccttggatgcggatgaa
ataattgaaataggtgcagttaaagtttacagaggccaaatcatagacaggtttcattct
ttcgtcaaccccggcagacctatctcttctcatataaccaacctgacggggattaacaac
gccatggtcagtcaagcaccgcccgttaaagatgtaatgtcggatttcttgcgttttatc
ggtaatggtattttcgtcgcccacaacgcggaattcgatgcgggttttatcagaagagat
tgtaaaaaatttggtatgaaatttgacaataaagtaatggatacattaaatctttcagct
cttgtttttccagaacttaagaaccaccgcctggacaccatagctaaaaaatttaacata
aatatgggaagccatcacagggctggtgacgacgccaacacgacagcgttgatacttatc
gagttgctcaagaaactgaaagaacaaggaatagatgacctctctatgataaatcaggtc
aacaaaaaggctacccagtatctcaattcctatcacgctattatactcgttaaaaacagc
cagggattgagagatctttataaattggtgtcgatttctcatctggagtatttttacaga
catccacgcattccaaaaagccttttaaaaaaatacagagaggggcttattgtagggtca
ggttgcgaagctggggaattatttcagagtttgatctatcatcactctgacaaggatata
gagcgaatagtctttttttacgattttctggaaattcaacccttacagaataacaaattt
ctgatagaaaaaggcatactttcaaacgaagagaaactaaaggagataaataaaaggatt
taccagctaggcaaaaagtacaacaaacccgtggttattaccggcgatgtacactttttg
aatccagaggatgaaacctacaggaaaattttgctgacggttcagggatatcgggataat
aatctcgactccgggctttacctcaagaccaccgaagagatgttggatgaatgccgatac
ctgggagaggaagccgctaaagaagtggtcattgaaaatcccaaccgcatcgccgacgag
atagaagacggaataaaaccggtccccgacgaactttatcctcccaaaatcgaaggagcc
gatgaagaaatcattaacatgacatataacagggccaaagaaatttacggcgaagagctc
cctgaaatcgtaaaaaagagaatagagcgggaactgaattcgatagttaacaacgggtat
tcggttatataccttattgctcacaaacttgtcaaaaaatcgctggatgacggttatctt
gtaggctcccggggttctgtaggctcatctctggtggcgaccatgtgcggcattacggaa
gtcaaccccctgccgccgcactacctgtgcccgaagtgcaaaaactctattttccccgac
aatgtcgaaggaattgtggggccggaccttcccgataaaatatgccctgtttgcggatgc
cctatgaaaaaggacgggtacaacatcccatttgaagtatttatgggcttcgagggagac
aaggtgccggatatcgaccttaatttttcaggagaataccagccaatcgctcacaagtat
actgaagaactgttcggtaaaaacaatgtattccgtgccggcacgatttcgaccatcgcg
gaaaagaccgcttatggctttgtgagagcctaccttgaagaaaaaaggataacggcatcc
gagtatgagataaagcgccttgctgcaggtatcaccggggtaaagcgtacaaccggccag
caccctggcggattgatggtcgttccgaaagacaaggagatatttgaatttacacctatt
cagtaccctgccgacgacaaagaatctggagttatcactacccatttcgactaccattca
ataagcgagcggttacttaaacttgatctcctgggccacgacgatcctacggttataaaa
atgcttgaggaggagacaggtattgacgcaaaaaaaataccgctggatgacagagctaca
atggcgatattttcctcattagaacccctgggattgaaacctgaagatgtaggaactact
gtaggaacgctgggagtccccgaattcggaacacgatttgtgaggcagatgctggaagaa
acgaggccgactactttttcagaactggtcaggataagcggtctttcccatggcaccgac
gtatggcttaacaacgctcaagacctgataaaaaataagatggctactcttaaagaagtg
atcgctacccgcgacgacataatgatacacctgatagaaaaaggtatagatcataaaacg
gcttttaccataatggaaaaggttagaaagggtaaggggttaaagcctgaagaggagcag
attttaaaagaaaacggcgttgaacaatggtttatagattcctgtaaaaagataaagtac
atgtttcctaaagctcacgcggtggcctacgtgataatggccttcaggatagcttacttc
aaagttcattaccccgaagccttttatgctacctattttaccgtaagagccgatgacttc
gacgcaaaacttatcctccagggccctaaaaaaataaaagaggttattgaagaaataaat
aaaaaggaaaagaacgcaacgccgaaagaaaagaacctgctgacgattctggaagttgcc
aacgagatgtatatgaggggaatccagttcataccgatagatctatataaatcgcattac
agtaaattcattatcacgaaagaaggtatactccctcctcttaatgctttaccgggcctg
ggactttcggcggctcagagcatatacaatgagaggcaaaagggcgaatttgcctccatc
gaagaccttcggatgcgcacaagagtgacgaaaaacgtggtggaaatcctccgtcagagc
ggggtactaaacggtctccaggaaactaaccagataagtcttttttaa
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