Thermosediminibacter oceani: Toce_1735
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Entry
Toce_1735 CDS
T01289
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
toc
Thermosediminibacter oceani
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
toc03016
]
Toce_1735
Enzymes [BR:
toc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Toce_1735
Transfer RNA biogenesis [BR:
toc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Toce_1735
Prokaryotic type
tRNA splicing ligases
Toce_1735
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADL08470
UniProt:
D9RYP6
LinkDB
All DBs
Position
complement(1733988..1735421)
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AA seq
477 aa
AA seq
DB search
MKAKLKPVSTNCYAFTNPESKVEIHVYLSPGLFQDFGEDEAINQLYNASLLPGVVSPVIG
MPDIHTGFGLPIGGVMATDYETGVVSAGAVGMDINCGVRLLTTRIDAGEINKEKISKILD
AISSRVPSGVGKSSAVKALRKPDLDAVAQIGVEYFVRAGFGRKEDLERIEDRGCIPGGDA
AAVPKAARERADQLATIGGGNHFIEIGRVAKVFDQETAERFGLFKDMVYVLIHTGSRGLG
HQICTDYSRIMWEHSERNGSKAPVKGLACAPVFSEDGQNYLKAMACAANYAFCNRQLITH
FVREAFVEVLKKPESELGLDLLYDVAHNIAKKEKHGGRWLLVHRKGATRALPAGHGDNPP
CYRDTGHPAIIPGSMGTASYVLVGLPEIHRTFCSVNHGAGRVMSRKRAKSEFTREQLLEQ
TKNVVIAASNLKALLDEAPLAYKDIDEVVFTLVDAGLTKPVVKLKPMGVLKGEGDES
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaaaactgaaacccgtttccaccaactgctacgcattcaccaaccccgaatca
aaggttgaaattcatgtttatctcagtcccgggctatttcaggatttcggggaggacgaa
gccataaaccagctttacaacgcctcactcctgccgggggttgtaagcccggttatcggc
atgccggacatacataccgggttcgggctgcccataggaggagtcatggctaccgactac
gaaaccggcgtggtttcggcgggtgccgtagggatggacataaactgcggcgtcagactt
ttgaccaccaggattgacgcaggggaaataaacaaggaaaagatatcgaagatcctggat
gccatatcatcccgtgtgccttccggagtgggcaaatcgagtgcggtgaaggctcttcga
aaaccggacctggatgcggtggctcagatcggggtcgagtattttgtaagggcaggcttc
ggcagaaaggaagacctggagaggatcgaggaccgggggtgcatccccggaggagatgcc
gcagcggtgcccaaggcggcgagggaaagggctgaccagcttgccaccataggcggcggc
aatcacttcatagaaataggcagggttgcaaaggtcttcgaccaggagaccgcggaaaga
ttcgggctttttaaagacatggtatacgtgctcatacacaccggcagccggggcctgggg
caccagatatgcaccgattattccaggattatgtgggaacattccgagaggaacggctcc
aaggctccggtgaagggacttgcgtgcgcaccggttttttcggaggacggccaaaactac
ttgaaagccatggcctgtgcggccaactacgctttctgcaaccggcagttaataacccat
ttcgtgcgggaggccttcgtagaggtcctgaaaaagcccgaatccgagctgggactcgac
ctgctttacgacgtagcccataacatcgcaaaaaaagaaaagcacgggggaaggtggctc
ctcgtccacaggaagggcgctaccagagccctccccgccggccatggcgataatccgccc
tgctacagggatactgggcatccggcgataatccccggcagcatgggcacggcctcgtac
gtgctggtgggactccccgaaatacaccgcactttttgctcggtaaaccacggcgccggc
cgggtcatgtccaggaagagggcaaagagcgaatttacaagagaacagctcctggaacag
acaaaaaacgtggttatagcggcgagcaatttaaaggcgctgctagatgaggcgccgttg
gcctacaaagatatcgacgaggtggtgttcactctggttgatgccggcctcacaaagccg
gtggtgaagctaaagcccatgggagtcttaaagggcgaaggcgacgaatcgtaa
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