Thermosediminibacter oceani: Toce_1758
Help
Entry
Toce_1758 CDS
T01289
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
toc
Thermosediminibacter oceani
Pathway
toc03420
Nucleotide excision repair
toc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
toc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Toce_1758
03430 Mismatch repair
Toce_1758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
toc03400
]
Toce_1758
Enzymes [BR:
toc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Toce_1758
DNA repair and recombination proteins [BR:
toc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Toce_1758
MMR (mismatch excision repair)
Other MMR factors
Toce_1758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
DUF3553
DEAD
Motif
Other DBs
NCBI-ProteinID:
ADL08492
UniProt:
D9RYR8
LinkDB
All DBs
Position
complement(1758075..1760270)
Genome browser
AA seq
731 aa
AA seq
DB search
MNYLSDLNEEQRKAVTHPGGPLLILAGAGSGKTRVLTYRIAYLIEKMGVDPGSIMAITFT
NKAAQEMKERIEKLLPWARGMLVSTFHSACVRILRSDIDKLGYNKNFIIFDTQDQLVLIR
DCIKALGLDEKKYAPTAVLNYIGRAKDRLQTPEECHDRAKDIREKAMSRVYELYQKRLKE
SNALDFDDLIMKTVELFRKNPEVLSYYQNRFRHILVDEYQDTNRAQYVLVKLLAEKHRNL
CVVGDDDQSIYGFRGADIRNILDFEEDFPDATVIRLEQNYRSTQNILDAANSVISHNFDR
KQKSLWTENGRGDKIYLATLGNEHEEAFFIAREIEKLVNMKNFRFRDFAVLYRTNAQSRV
LEEMMVKMGLPYKIVGGVRFYQRREIKDILAYLRVVANPSDNVSLLRIINVPRRGIGEAT
VETLKLLAEEREKSVYHIMKEELAELSSRVRSKLRDFVDMIDDFIKKAGELSVPDLIAYI
LDRSGYLKELEAENTPDAQSRIENLKEMIGVAIEFEKKFPGAALQDFLAEIALVSDVDEF
DEDRDAVILMTLHSAKGLEFPVVFLSGMDEGIFPHSRAMFDEEELEEERRLCYVGITRAK
KRLYLTRAWSRNLYGNTSYYSASRFIDEIPARLIKEIRPGDDTLEEEEKPREDKKAEQAV
PVKPRTQKLKTGVKPQEPVKLNPGDRVKHSKWGEGVVTAVYGAGENTEIAVNFASEGTKR
LMLKYAPLVKI
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaactacctgtccgacctaaacgaagagcaaagaaaggcggtcacacacccgggaggg
cctcttttgattctggcaggagcgggaagcggcaagaccagggtgctaacttacaggatc
gcatatctcattgagaaaatgggtgtcgaccccgggagcataatggctatcacctttacc
aacaaggcggcacaggagatgaaggagaggatcgaaaagctcctgccctgggcccggggg
atgctggtcagcacctttcactcggcctgcgtgcgtatactgaggtccgacatagacaag
ctgggttacaacaaaaacttcataatcttcgacacccaggaccagctggtgctgataagg
gattgtatcaaggccttggggcttgacgaaaagaaatacgcccccacggcggtactcaat
tacatcggcagggccaaggaccggcttcaaaccccggaggaatgccatgatagagcgaag
gatataagggaaaaggccatgtccagggtgtacgagctttaccagaagaggttaaaggag
agcaacgccctggatttcgacgacctgataatgaagaccgtggagcttttccgcaaaaac
cccgaagttctatcctattaccagaacaggttcaggcatatactggtggacgaataccag
gacaccaacagggcccagtacgtcctggtcaagttgctcgccgaaaagcacaggaatctg
tgcgtcgtaggcgacgacgaccagagcatatacggcttcagaggggcagatataagaaac
atactggatttcgaagaggattttcccgatgctacggttatccgcctggaacagaactac
cggtctacccagaacattctcgacgccgccaacagcgtcataagtcacaatttcgacagg
aagcaaaaaagtctgtggaccgagaacggcaggggcgataagatatatcttgctaccctt
gggaacgagcacgaagaggcttttttcattgcccgggaaatagaaaaacttgtaaatatg
aaaaatttcaggttcagagactttgcggtgctttacaggaccaacgcccagtctcgcgtt
ctggaagagatgatggtgaagatgggcctgccgtataaaattgtgggtggcgtcaggttt
taccagcgcagggaaataaaggacatcctggcataccttcgcgtcgtcgccaatccatcg
gataacgtaagtctcctcaggatcataaacgtgccgcggcggggtataggcgaggctacg
gtagagacccttaaactgctggcggaagaaagggaaaagtccgtttatcacatcatgaag
gaagaattggcggaattatcctccagggtcaggagcaaactccgcgacttcgtggatatg
atagacgattttatcaagaaagccggagagctttcggtgcccgacctcatcgcttatatc
ctggacaggagcggttatttgaaggaactggaagccgaaaacacgccggatgcccagagc
cggattgaaaacctgaaggaaatgataggcgtcgctatagagtttgaaaagaagttcccg
ggagcggcacttcaggacttcctggccgaaatcgccctggtctccgacgtggacgagttc
gacgaggacagggacgcagtgattttgatgacgctgcacagcgctaagggcctggaattt
ccggtggtttttttgagcgggatggacgaagggatattcccgcattcaagggctatgttc
gacgaggaagaactcgaggaggaacggcggctgtgctacgtagggataacgcgagcgaag
aagaggctttacctcaccagggcctggagccgcaacctctacggcaacacctcctattat
tccgcctccaggtttatcgacgaaatccccgcaaggttgataaaagagatcaggcccgga
gatgatacactggaggaagaagaaaagcctcgcgaggataaaaaagcggaacaggctgta
cctgtaaaaccccggactcaaaaactgaaaacgggggtaaaacctcaggagccggtaaaa
ttgaatcccggcgacagggtgaagcattccaagtggggtgaaggcgtggtcaccgccgta
tacggagccggcgaaaatacagagattgcggtgaacttcgcctcggaaggaacaaaacgc
ctgatgttaaagtacgctcctttggtgaagatatga
DBGET
integrated database retrieval system
