Talpa occidentalis (Iberian mole): 119232007
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Entry
119232007 CDS
T07495
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tod
Talpa occidentalis (Iberian mole)
Pathway
tod03008
Ribosome biogenesis in eukaryotes
tod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119232007 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
119232007 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tod03021
]
119232007 (XRN2)
03019 Messenger RNA biogenesis [BR:
tod03019
]
119232007 (XRN2)
03009 Ribosome biogenesis [BR:
tod03009
]
119232007 (XRN2)
03016 Transfer RNA biogenesis [BR:
tod03016
]
119232007 (XRN2)
Transcription machinery [BR:
tod03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119232007 (XRN2)
Messenger RNA biogenesis [BR:
tod03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119232007 (XRN2)
Ribosome biogenesis [BR:
tod03009
]
Eukaryotic type
Pre-60S particles
RNases
119232007 (XRN2)
Transfer RNA biogenesis [BR:
tod03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119232007 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
119232007
NCBI-ProteinID:
XP_037349776
LinkDB
All DBs
Position
Unknown
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAVEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPGGLLTPHALGLRNSPSSQVANNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPIGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEETRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGIQG
KFSLDEVAILPDQVVCSPVPMLRDLTQNAAISINFKDPQFAEDYIFKAVMLPGARKPAPV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGTGIYSNAAPPPAA
YQGNLYRPLLRGQAQIPKLMSNMRPQDSWRGPPPLFQQQRFDRGLGAEPLLPWNRMLQSQ
NAAFQPSQYQMLAGPGGYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttctttcgctggctcagccgcaagtacccgtctatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattcctgttgatgccagtaaa
cctaatccaaatgatgtggagtttgataatctgtacttggatatgaatggaattatccat
ccctgcactcatcccgaagacaaaccagcaccaaaaaatgaggatgaaatgatggttgca
atttttgagtatatcgacagacttttcaatattgtaagaccaagacgacttctgtatatg
gcaatagacggagtggcaccacgtgctaaaatgaaccagcaacgttcgaggaggttcaga
gcatcaaaagaaggaatggaagccgcagtagaaaagcagcgagtcagggaagaaatactg
gcaaaaggtggctatcttcctccagaagaaataaaagaaagatttgatagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagctgat
cgtttaaataatgaccctgggtggaaaaatttgacagttattttatctgatgctagtgct
cctggagaaggagaacataaaatcatggattacattagaagacaaagagctcaacctaac
catgatccaaacactcatcattgcttatgtggagcagatgctgatctaattatgctcggc
cttgctacacacgaacccaactttaccattattagagaagaattcaaaccaaacaaaccc
aaaccatgtggtctttgtaatcagtttggacatgaggtcaaggactgtgaaggtttgcca
agagaaaagaagggaaagcatgatgaacttgcagatagtcttccttgtgctgaaggagag
ttcatcttccttcgtcttaacgttctccgtgagtatttggaaagagaactcaccatggcc
agcctgccattcacatttgatattgagaggagcattgatgactgggtcttcatgtgcttc
tttgtgggaaatgacttccttcctcacctgccatcattagagattagggaaggtgcaatt
gaccgcttggttaacatatacaaaaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaagaaagagaatgaagagagatcagccagctttcactcctggtggattattaacccct
catgctttgggtttaagaaattcacccagttctcaagtagccaataatccaagacaagca
gcctatgaaatgaggatgcagaataactctagtccttcagtgtctcctaatacaagtttc
acttctgatggctccccatctccaataggaggaattaaacgaaaagcagaagacagtgac
agtgaacctgagccagaggataacgtcaggttgtgggaagctggttggaagcagcggtac
tacaagaacaaatttgatgttgacgcagctgatgagaaattccgccgtaaagttgtacag
tcttatgttgaagggctctgctgggttcttcgatattattaccagggctgtgcttcctgg
aaatggtattatccattccactatgcaccatttgcttcagactttgaaggtattgcagac
atgccttctgattttgagaagggtactaaaccgtttaaaccattggaacaacttatggga
gttttcccagctgcaagtggtaattttctacctccatcttggcgaaagctcatgagtgat
cctgattctagtataattgacttctaccctgaagattttgctattgatttgaatggaaag
aaatatgcatggcaaggggttgcactgttaccatttgtggatgaacgaagacttcgagct
gctctagaggaggtttatccagatctcactccagaagagactagaagaaatagtcttgga
ggtgatgttttatttgtggggaaacatcacccactccacgacttcattttagaactctac
cagacaggttccacagagccagtagatgtaccacctgaactatgccatgggattcaagga
aagttttctttggatgaagtagccattcttccagatcaagtagtatgttctcctgttccc
atgttaagggatctgacacagaatgctgcaatcagtattaattttaaagacccacagttt
gctgaagattacattttcaaagctgtaatgcttccaggagcaaggaaaccagcaccagta
ttgaaacctagtgactgggagaaatccagcaatggacggcagtggaagccccagcttggc
tttaatcgggaccgtcggcctgtccacctggatcaggcagcattcaggactttgggccat
gttatgccaagaggctcaggaactggcatttacagcaacgctgcaccaccacctgcagct
tatcagggaaacttatacaggccgctattaagaggacaagcccagattccaaaacttatg
tcaaatatgaggccccaggattcctggcgaggtcctcctccccttttccagcagcaaaga
tttgacagaggccttggggctgaacctttgctgccatggaaccggatgctccagagtcag
aacgcagccttccagccaagccagtaccagatgctggctgggcccggcggctatccaccc
agacgcgatgaccgcggagggagacagggctatcccagagaaggaaggaagtaccctttg
ccaccaccctcaggaagatacagttggaattag
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