Talpa occidentalis (Iberian mole): 119235083
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Entry
119235083 CDS
T07495
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tod
Talpa occidentalis (Iberian mole)
Pathway
tod04820
Cytoskeleton in muscle cells
tod04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119235083 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119235083 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tod00536
]
119235083 (COL11A1)
Glycosaminoglycan binding proteins [BR:
tod00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119235083 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
119235083
NCBI-ProteinID:
XP_037354031
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MERWSSRWKTKRWLWDFTVTTLALTFLFQAREVRGAAPVDVLKALDFHNFPEGISKTTGF
CTNRKNSKGSDTAYRVSKLAQLSAPTKQLFPGGTFPEDFSILFTVKPKKGIQSFLLSIYN
EHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIV
DCKKKTTKPLDRSERAIVDTNGITVFGTRILDEEVFEGDIQQLLITGDPKAAYDYCDHYS
PDCDSSAPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAEIVTERPTVTEETVAQTEA
NIVDDFQEYNYGTMESYQTEAPRRVSGPNEPNPVEEVFTEEYLTGEDYDSQRKNSEDTQY
ENKGIDGRDSDLLVDGDLGEYDFYEYKEYEDKPTSSPNEEFGPGVPAETDFTETSINGYG
TYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGRPGLP
GADGLPGPPGTMLMLPFRYGGDGSKGPTVSAQEAQAQAILQQARIALRGPPGPMGLTGRP
GPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPSGKPGKRGRPGADGGRGMPGEPGSKGDR
GFDGLPGLPGDKGHRGERGPQGPPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTP
GPTGQPGMAGIDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKS
GLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEK
GEDGFPGFKGDMGLKGDRGEVGQLGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVP
GLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKP
GPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKT
GPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKD
GPAGLRGFPGERGLPGAQGASGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQ
GPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSK
GDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQ
GLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGDKGEPGEA
GNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPP
GEPGPSGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK
GEAGAEGPAGKTGPVGPQGPAGKTGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP
GLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPP
GPPGLPGPQGPKGNKGSTGPAGQKGDGGLPGPPGPPGPPGEVIQPLPILSPKKTRRHTES
IQADASDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDG
EYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFKRGKL
LSYLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSAAWYDVSSGSYDKALRFLGSNDE
ELSYDNNPYVKALYDGCSSRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVG
PVCFLG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggagcgctggtcctctaggtggaaaacgaaacggtggctctgggatttcaccgtaacg
accctcgcgttgactttcctcttccaggctagagaggtcagaggagctgctccagttgat
gtactaaaagctctggattttcacaattttccagaaggaatatcaaaaacaacaggcttt
tgtaccaacagaaagaattcaaaaggttctgatactgcttacagagtttcaaagctagca
caactcagtgccccaacgaaacaactatttccaggaggaacttttccagaagatttttca
atattatttacagtaaaacccaaaaaaggaattcagtctttccttttatctatatataat
gagcatggtattcagcaaattggtgttgaggtcgggagatcacctgttttcctgtttgaa
gaccacactggaaagcctgccccagaagactatcccctcttcagaactgttaacatcgct
gatggaaagtggcatcgagtagccatcagcgtcgagaagaaaactgtgactatgattgtt
gattgtaagaagaaaactacaaaaccacttgacagaagtgagagagcaattgttgacacc
aatggaatcacggtttttggaacaaggattttggatgaagaagtgtttgagggagacatc
cagcaactgctgatcactggagaccccaaagctgcctatgactactgtgatcactatagc
cctgactgtgattcttcagcacctaaggctgcacaggctcaggaaccccagattgatgag
tatgcacctgaggatataatggaatatgactatgagtatggggaagcagaatataaagag
gctgaaattgtaactgagagacccactgtaactgaggagacagtagcacaaactgaggca
aatatcgttgatgattttcaagaatacaactatggcaccatggaaagttaccaaacagaa
gctcctaggcgtgtgtctggaccaaatgagccaaatccagttgaagaggtatttactgaa
gaatatcttactggagaggattatgattctcaaaggaaaaattccgaggatacacaatat
gaaaacaaaggaatagacggcagggattctgatcttctggtagatggagatctaggcgaa
tatgatttttatgaatataaagaatatgaagataaaccaacaagttcccctaatgaagaa
tttggtccaggtgttccagcagaaactgatttcacagaaacaagcataaatggttatggt
acttatggagaaaaaggacagaaaggagaaccagcagttgttgaacctggtatgcttgtg
gaaggaccaccagggccagcgggacctgcgggtctgatgggtcctccaggtctacaaggt
cccactggaccccctggtgacccgggcgaaagggggcccccaggacgtcctggcttacca
ggtgctgatggtctgcctggtcctcccggtactatgttaatgttaccgtttcgttatggt
ggtgatggttccaaaggtcccaccgtctctgctcaggaagctcaagcccaggccatactt
cagcaggcacggattgctctgagaggtccaccaggcccaatgggtctaactggaagacca
ggccctgtgggggggcctggctcatctggggcaaaaggtgagagtggagatccaggtcct
cagggccctcgtggtgtccaaggtcctcctggtccatctggaaaacctggcaaaaggggt
cgtccaggagctgatggaggacgaggaatgccaggagaacctgggtcaaagggagatcga
ggatttgatggacttccaggtctgccaggtgacaaaggccacaggggtgaaaggggtccc
caaggtcctcctggtcctcctggtgaagatggaatgaggggagaagatggagaaatagga
ccaagaggtcttccaggtgaagctggcccacgaggtttgctgggacctaggggaactcca
ggacccactgggcagcctggtatggcaggtatagatgggcctccaggaccaaaagggaat
atgggtccccagggggaacctggaccgccagggcagcaagggaatccaggacctcaaggt
cttcctggtccacaaggcccaattggtcctcctggtgaaaaaggaccacagggaaaatca
gggctggctggacttcctggtgctgatgggcctccaggtcatcctggaaaagaaggccaa
tctggagaaaaaggtgctctgggtcctcctggtccacaaggtcctattggctaccctggt
ccccgaggagtaaagggagcagatggtgtcagaggtctcaagggttctaaaggtgaaaag
ggtgaagatggttttccaggattcaaaggagacatgggccttaaaggtgacagaggagaa
gttggccagctaggcccaaggggagaagatggtcctgaaggccccaaaggtcgggcaggc
ccaactggagaccctggtccttctggtcaagcaggagagaaggggaaacttggtgttcca
ggattacccggatatccaggaagacaaggtccaaagggttccactggatttcctgggttt
ccaggtgccaacggagagaaaggtgcacggggtgtagctggcaaaccaggccctcggggt
cagcgtggtccaacgggccccagaggttcaagaggtgcaagaggtcccactgggaagcct
ggcccaaagggtacttccggtggtgatggtcctcctggcccgccaggcgaaagaggacct
caaggacctcagggtccagttggatttcctggaccaaaaggccctcctggacctcccggg
aaggatggacttccaggacaccctggacagcgtggagagactggatttcaaggcaagact
ggccctcctggaccaggaggtgttgttggacctcagggaccaactggagagactggtcca
ataggggaacgtggacatcctggtccccctggcccccctggagaacagggtcttcctggt
gctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggcatctcagggaaagac
ggaccagcaggactgcgtggtttcccaggtgaaagaggccttcctggagcccagggtgca
tctggactgaaaggcggggaaggtccccagggcccaccaggtccagttggctcaccagga
gaacgtggatcagcaggtacagctggcccaattggtttgccagggcgtccaggaccccag
ggtcctcctggtccagctggagaaaaaggtgctcctggtgaaaaagggccccaaggcccc
gctgggagagatggaatccagggccctgtgggtcttccagggccagctgggcctgctggc
tctcctggagaagatggagacaagggtgaaattggtgaaccaggacaaaaaggcagcaag
ggtgacaaaggagaaaatggtcctcctggccccccaggtcttcaaggaccagttggtgcc
cctggaattgctggaggtgatggtgaaccaggtcccagaggtcaacaagggatgtttggc
caaaaaggtgatgagggtgcgagaggtttcccgggacctcctggccccataggtcttcag
ggtctgcctggcccacctggtgaaaagggtgaaaatggagatgtgggtcctatgggtcca
ccaggcccaccaggcccaagaggccctcaaggtcccaatggagctgatggaccccaagga
cccccaggatctgttggttcagttggtggtgttggagataagggtgaacccggtgaagca
gggaaccctgggcctccaggagaagcaggcacaggcggccccaaaggagaaagaggggaa
aaaggagaagctggtccacctggtgctgctggacctcctggtgctaaggggccgccagga
gatgatggccctaagggtaacccgggtcctgtaggttttcctggagatcctggtcctcct
ggggaacctggcccttcaggtcaagatggtgttggtggtgataagggtgaagacggagat
cctggccagccgggtcctccaggcccatctggtgaggctggtccaccaggtcctcctgga
aaaagaggtcccccaggagctgctggtgcagagggaagacaaggtgaaaaaggtgctaag
ggtgaagcaggtgctgaaggtcctgctggaaaaactggcccagttggcccccagggacct
gctggaaagacaggtccagaaggacttcggggcatccctggccctgtgggagaacaaggt
ctccctggagctgcaggccaagatgggccacctggtcctatgggacctcctggcttacct
ggtctcaaaggtgaccctggctccaagggtgaaaagggacatcctggtttaattgggtta
attggtcctccaggagaacaaggtgaaaagggtgacaggggactccctggaactcaagga
tctccaggagcaaagggagatgggggaattccaggtcctgctggtcccataggcccacct
ggtcctccaggcttgccaggccctcaaggtccaaagggtaacaaaggctctactggtcct
gctggtcagaagggtgatggtggtcttcctggacctcctgggcctcctggtccacctggt
gaagtcattcaacccttaccaatcttgtcacccaaaaaaacaagaagacatactgaaagc
atacaagcagatgcaagtgataatattcttgattactcggatggcatggaagaaattttt
ggttcactcaattccctgaaacaagacattgagcatatgaaatttccaatgggtactcag
accaacccagcccggacttgcaaggatctgcagctcagtcatcctgacttcccagatggt
gaatattggattgatcctaaccaaggttgctcaggagattccttcaaagtttactgtaat
ttcacatccgggggtgagacttgcatttatccagacaaaaaatctgaaggcgtaagaatt
tcatcatggccgaaggagaaaccaggaagctggtttagtgaatttaagagaggaaagctg
ctttcctatttggatgttgaaggcaattccattaatatggtgcaaatgacattcctgaag
ctgctgacagcctctgctcggcaaaatttcacctacaactgtcatcagtcagcagcctgg
tatgacgtgtcatcaggaagctatgacaaagcacttcggttcctgggatccaatgatgag
gagttatcctatgacaacaacccttatgtgaaagcgctatatgatggctgctcgtccaga
aaaggctatgaaaagactgtgattgaaatcaatacaccgaaaattgatcaagtccctatt
gttgatgtaatgatcaatgactttggtgatcagaatcagaagtttggatttgaagttggt
cctgtttgttttcttggctaa
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integrated database retrieval system
