Talpa occidentalis (Iberian mole): 119247324
Help
Entry
119247324 CDS
T07495
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tod
Talpa occidentalis (Iberian mole)
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tod03016
]
119247324 (RTCB)
Enzymes [BR:
tod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119247324 (RTCB)
Transfer RNA biogenesis [BR:
tod03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119247324 (RTCB)
Prokaryotic type
tRNA splicing ligases
119247324 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
119247324
NCBI-ProteinID:
XP_037369575
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHKSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactacaatgacgagctgcagttcttggaaaagatcaataaaaactgctgg
agaatcaagaagggcttcgtccccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaactaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagctcttcctgggattgttcat
aaatctattggacttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgaatgaccctgaagcagtggtgtccccaggtggcgtaggatttgacatc
aactgtggtgtccgcttgctaagaaccaacttagatgaaagtgatgtccagcctgtgaag
gagcaactagcccaagctatgtttgaccacatccctgttggagtgggatcaaagggtgtc
atcccaatgaatgccaaggacttagaggaggccttggagatgggtgtagactggtcctta
agagaaggctatgcatgggctgaagacaaggaacattgtgaagaatatggaaggatgctg
caagctgaccccaataaggtctctgcaagggctaagaaaagaggccttcctcagttggga
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgatcataagggacaggtgtgtgtgatgatccacagc
ggaagcagaggattgggccaccaagtagccacagatgcactggttgctatggaaaaggcc
atgaagagagacaagattattgtcaatgaccgccagctggcttgtgcacgaattgcgtcc
cccgagggtcaggactatctcaagggaatggcagctgctgggaactacgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggctttcgccaaggtcttcaacacaacccct
gacgacttggacctacatgtgatctatgatgtttctcacaatattgccaaagtggaacag
catgtggtagatggaaaggaacggacgctgctggtacaccgcaaggggtccacccgcgct
ttccctcctcaccacccgctcattgccgttgattaccaactcacaggccagccagtgctg
attggtggcaccatgggaacctgtagttacgttcttaccggcactgaacagggcatgact
gagacttttggaacaacctgtcatggagcgggccgtgcattgtcccgagccaagtctcga
cgtaatttagatttccaggatgtgttagacaaattggcagatatgggcattgcaattcgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctacaagaacgtgaccgac
gtggtgaacacctgccacgatgctggaatcagcaagaaggccattaaactgagaccaatt
gctgttatcaaaggctag
DBGET
integrated database retrieval system
