Talpa occidentalis (Iberian mole): 119249503 Help Entry 119249503         CDS       T07495                                  Symbol LIG1 Name (RefSeq) DNA ligase 1 isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism tod  Talpa occidentalis (Iberian mole) Pathway tod03030   DNA replication tod03410   Base excision repair tod03420   Nucleotide excision repair tod03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tod00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     119249503 (LIG1)    03410 Base excision repair     119249503 (LIG1)    03420 Nucleotide excision repair     119249503 (LIG1)    03430 Mismatch repair     119249503 (LIG1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tod03032]     119249503 (LIG1)    03400 DNA repair and recombination proteins [BR:tod03400]     119249503 (LIG1) Enzymes [BR:tod01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      119249503 (LIG1)     6.5.1.6  DNA ligase (ATP or NAD+)      119249503 (LIG1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      119249503 (LIG1) DNA replication proteins [BR:tod03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     119249503 (LIG1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      119249503 (LIG1) DNA repair and recombination proteins [BR:tod03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      119249503 (LIG1)    NER (nucleotide excision repair)     Other NER factors      119249503 (LIG1)    MMR (mismatch excision repair)     Other MMR factors      119249503 (LIG1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DDR PucR Motif Other DBs NCBI-GeneID:  119249503 NCBI-ProteinID:  XP_037372775 LinkDB All DBs Position Unknown AA seq 918 aa AA seqDB search MQRSIMSFFQPKKEGKAMKPEKETSNSTREPEPPPKVALKERNGVVPENDSPVKRPRRKL ARVLGSEGEDEEEARTPPKVLKLAPDSPPVSPPSPVTFPDSNSSPSDTSAMGISPSGIPK RRTARKQLPKRSIQDVLEDQSQDKERDAKKRKEEEKETDPPTESLQHPEVTRKKGAEEEH QPTPPPEPSKAAKTEPLAESISEPEVAMKQEPREEAQAPPASRAPKTLSSFFTPRKPAVK KEAKEEGSGTPRKEEAKGPLDPASYNPAKNNYHPVEDACWLPGRKVPYLAVARTFEKIEE VSARLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQEGLELGVGDGVLLKAVAQA TGRQLDSVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLSAAGVFTKFQDIARLSGHASTT KKMDVIKGLFVACRHSEARYIARALSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPPAVV DAGKGKTAETRKTWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLDHLPEHCRLSPGIPLK PMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDI ISRIPKIKLPSVTSFILDAEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAFD LIYLNGESLVREPFSRRRQLLRDNFVETEGEFVFATSLDTKDTDQIAEFLEQSVKDSCEG LMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGAYLGRGKRAGRYGGFLLA SYDEESEELQAICKLGTGFSDEQLEEHHQSLQALVLSGPRSYVRADGAVAPDHWLEPSAV WEVKCADLSLSPIYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATSSAQVACLYRKQS QIQNQQGEDLDSEGEDFY NT seq 2757 nt NT seq  +upstreamnt  +downstreamnt atgcagcgaagtatcatgtcatttttccaacccaagaaagagggcaaagcgatgaagcca gagaaggagacatccaacagtaccagagagccagagccccctccaaaagtggcactgaag gagcggaatggagtggtacctgagaatgactcaccagtcaagaggccaaggaggaagtta gctcgggtcctgggcagcgaaggagaagacgaggaggaagcccgcacgccccccaaagtc ctgaaacttgcccccgactccccgccagtgtcccctcccagtcctgtcacctttcctgat agcaactcttccccctcggatacctctgctatgggcatctccccatctgggatccctaag cgtcgcacagcccggaaacaacttcctaaacggtcaattcaagatgtcctagaagatcag agccaggacaaggagagagatgccaagaagagaaaggaggaggagaaagaaacagacccc ccaacagaaagcctccagcatcctgaagtgacaagaaagaagggagcagaagaggagcac cagcccacaccaccccctgagccctcaaaggccgccaaaacagagcctctggcagaaagc atctcagagcctgaggtggcgatgaagcaagaaccaagggaggaagcccaggcgccccct gcctcgagagctcccaagactctcagcagcttcttcaccccccggaagccagcagtgaaa aaagaagcaaaagaagagggatctggtacgccaagaaaggaggaagccaagggacccttg gacccagccagctacaatcctgctaagaacaactaccaccctgtggaggatgcctgctgg ctgccaggccggaaggtaccttacctggccgtggcccggacatttgagaagatcgaggag gtttctgctcggctgcggatggtggagacactgagcaacttgctacgctcggtggtggcc ctctcccctccggatctcctccccatcctctatctcagcctcaatcgcctggggccaccc caggagggcctggaacttggtgtgggggacggcgtccttctcaaggcagtggcccaggcc acaggtcggcaacttgactcagtccgggcagaggctgcagagaagggtgacgtagggctg gtggccgagaacagccgcagtactcagagactcatgctgcccccgcccccactcagtgcc gctggggtcttcactaagttccaggacatcgcccggctctctggccatgcttctacaacc aagaagatggacgtcatcaaaggcctctttgttgcctgccgccactccgaagcccgctac attgccagagccctgagtggacggctgcgccttgggctggcagaacaatccgtgctggcc gccctggcccaggctgtgagcctcacgcccccaggccaagaattcccaccagccgtggtg gatgctgggaagggcaagactgcagagaccagaaagacgtggctggaggaacagggcatg attctgaagcagacattctgcgaggtacctgacctggaccggattgtcccggttctgctg gagcatggcctggaccacctcccagagcactgcaggctgagcccagggatccccctgaaa ccaatgttggctcaccctacccggggtgtcagtgaggtgctgaaacgctttgaggaagca gctttcacctgcgagtacaaatatgacgggcagagggcacagatccatgttctggaaggc ggggaggtgaagatcttcagcaggaaccaggaagacaatactgggaagtaccctgacatc atcagccgcatccccaagattaaactcccgtcagtcacatccttcatcctggatgctgag gctgtggcttgggaccgggaaaagaagcagatccagccattccaagtgcttaccacccgc aaacgcaaggaggtggacgctgcagagatccaggtgcaagtgtgtctgtacgcctttgac ctcatctacctcaatggagagagcctggtccgagagcccttttcccgacgccgccagctg cttcgggacaactttgtggagacagagggtgagtttgtcttcgccacctccctggacact aaggacacggaccagatcgctgagtttctggagcagtcagtgaaagactcctgcgagggg ctgatggtaaaaaccctggatgtcgatgccacctatgagattgccaagaggtcgcacaac tggctcaagctgaagaaggactacctcgaaggtgtgggtgacaccctggacctcgtggtg atcggcgcatacctgggccgggggaagcgggctggccgctatgggggtttcctgctggcc tcctatgatgaggagagtgaggagcttcaggccatatgcaagcttggcactggcttcagt gacgagcagctggaagaacatcaccagagcctgcaggccctggtgctgtctgggccccgc tcctatgtacgggccgatggcgccgtggccccggaccattggctggagcccagtgccgtg tgggaggtgaagtgtgccgacctctccctgtcccccatctacccagctgcccgcggcctg gtggatagtgagaaggggatctcccttcgcttccctcgatttattcgtgtccgtgaagac aagaagccagaggaggccacttccagtgcccaggtggcctgtctgtacaggaagcagagt cagattcagaaccagcaaggcgaggaccttgactccgaaggggaggatttctactga

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