Talpa occidentalis (Iberian mole): 119255681
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Entry
119255681 CDS
T07495
Symbol
PCF11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tod
Talpa occidentalis (Iberian mole)
Pathway
tod03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119255681 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tod03021
]
119255681 (PCF11)
03019 Messenger RNA biogenesis [BR:
tod03019
]
119255681 (PCF11)
Transcription machinery [BR:
tod03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119255681 (PCF11)
Messenger RNA biogenesis [BR:
tod03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119255681 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
119255681
NCBI-ProteinID:
XP_037378955
LinkDB
All DBs
Position
Unknown
AA seq
1681 aa
AA seq
DB search
MSEQTPAEAGXAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
NSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETASLGPGSAPSKLHVPQIPPMAVKTPHQVPVQPEKSRPGPSLQIQDLKGTNRDPRLN
RMSQHSSHGKDQSHRKDFLMNTVNQSDIKTSKTVPSEKLNSSKQEKSKSGEKITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESARVSDMSKRDPRLKKHLQDKTDNKDDDV
KEKRKTAEKKDKDEHMKSSEHRLIGSRNKIINGIVQKQDTVTEESEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLTPKAGKIRQSGVKQSHMEEFPLPSR
EERNTKRSTKQDVRDPRRIKKAEEERPQETANQHSTKSGPEPKENVENWQSSKSAKRWKS
GWEENKSLQQGDEHSKSPHLRHRESWSSAKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDSPAPRFAGRDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMI
FEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVG
APLRFEGPIGQGGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGSL
RFEGPHGQPVSGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGMRFEGQHNQLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSV
PGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRF
DGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGSRFDNHPSQRLESVSFNQTGPY
NDPPGNAFNAPSQGIQFQRPEQLFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNL
QSSQFGNFGNLPAPITVGNLQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGA
LPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPPEEEEDQNEDQD
VPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKD
VSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPA
GPAGSVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSP
SKTPVENPLNIMLNIVKNELQEPCESLQVKEEQIDTPPACIEESIATPTEIKTENDTVES
V
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggccgaggccgggnctgcgggggcccgggaggacgcctgccgg
gattatcagtcgtccctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcccgttatgtacctaatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctgccccccaatgtgaatacttctagtatccat
gtgaatcctaagtttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
aattcccctagcatctctactcctccaattgttcctgatatacaaaaaaatcttacccaa
gaacaactaataaggcagcagttgctggccaaacaaaagcagttgttagaacttcagcag
aaaaagctggagctggagctagagcaagcgaaggcacaactggcggtttcacttagtgtt
cagcaagagacagccagcttaggtcctggatctgcaccatctaaattacatgttccacaa
attccccctatggcagttaaaactccccatcaggttcctgtgcaacctgagaaaagccgt
ccaggcccatccttacaaattcaggatctgaaaggaactaaccgggatccccgtcttaat
agaatgagtcaacattcttctcatggaaaagatcaaagtcacaggaaagatttcctaatg
aacacagtgaaccagtctgatattaagacaagtaaaactgtaccgtctgaaaaattaaat
tcatccaagcaagaaaaaagtaaatcaggtgaaaaaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacccttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtgcaagggtatctgatatgagcaaa
agagatccaagattaaaaaaacatctgcaggataagactgataacaaagacgatgatgta
aaagagaagagaaaaactgcagaaaaaaaggataaagatgagcacatgaaatcatctgaa
cacagactaattggaagtagaaataaaatcatcaatggcattgtacaaaaacaggacacg
gtaacagaagaatctgaaaaacagggcacgaaaccggggagatcgagtacgagaaagcga
tcaagatcgagatcacccaagtctcgatcaccaattatacattctccaaagaggagagac
aggcggtcacctaaacgaaggcaaaggagtatgtctccaactttaacacccaaagctgga
aagattcgccagtcaggagttaagcagtcacacatggaagagtttccattaccttctagg
gaggaaagaaatactaagagaagcacgaagcaggatgttcgcgatccaaggcgaataaag
aaggcggaagaggaacggccacaggaaactgcaaatcagcattcgacaaagtcaggccct
gaaccaaaggaaaatgtagaaaactggcaaagttccaagtcggccaaaagatggaaatct
ggttgggaagaaaataaaagcttacaacaaggtgatgaacatagtaaatctcctcatcta
aggcacagggaaagctggtcaagtgcgaaaggaatcttgtcacctcgagccccaaagcag
cagcatcgattaagtgtagatgccaatcttcagattcctaaagaattaactcttgcaagc
aagagagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatttctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtacgagaagagcagagatcaccattcaatgat
cgttttccacttaagcgtcctagatacgaagattcagataaaccatttgtagacagtcca
gcaccaagatttgccggccgtgatacaaatcagcgacttacggctttagctgaagacaga
ccgttatttgatggacccggtaggccatcagtcacaagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggtggccctttgagatttgaaggacca
caaggtcagttaggaggtgggtgtcctttgagatttgaaggtcctccaggaccagtaggg
gcacctctgcggtttgagggaccaattggtcaaggaggaggaggaggttttcggtttgaa
ggttcacctggtctgaggtttgagggatctgcaggtggtttgcgattcgaaggaccaggg
ggccagcctgtgggtgggctcagatttgagggacaccggggtcaacctgtgggtagtcta
aggtttgagggaccgcatggtcaacctgtgagtggacttagatttgataatccccgaggt
caacctgtaggtggacttagatttgaggggggtcatggtccatcaggggctgcaattagg
tttgatggacctcatggtcagccagcaggtggaatcagatttgagggtcctttgctacag
cagggtgtcggaatgaggtttgagggtcctcatggtcagtcagtcgctggcatgaggttt
gaaggacaacataatcaacttaggtttgaggggccacatggtcaaccaggggttggtatc
aggtttgaaggacctttagtccaacaaggaggtggaatgaggtttgagggcccatctgta
ccaggaggcctgagaattgaaggacctctgggtcaaggcggtccaagatttgaaggttgt
catgctttaaggtttgatgggcagccaggtcagccatcacttttgccaagatttgatgga
ttacacggtcagccaggtcctagatttgaaagaactggtcagccaggccctcagagattt
gatggacctcctggacagcaggttcaaccaagatttgatggtgtgcctcaaagatttgat
ggtccacaacaccagcaagcatcaagatttgatattcctcttggtctccaaggctcacga
tttgacaatcatccttcacaaaggcttgagtcggtgtctttcaatcagactgggccgtat
aacgatccgcctggtaatgcttttaatgccccatcccaaggaatacagttccaaagacct
gaacaattatttgattcacctcaaggaccaaattttaatgggccacatggtcctggaaac
cagagtttctcaaatccccttaacagagcttctggacattattttgatgaaaagaatctt
cagagttctcagtttggaaactttggcaatttacctgctccaataacagtaggaaatctt
caggcatctcaacaggttttgactggtgttgctcagccagtagcatttggccaaggacaa
cagtttttaccagttcatccacaaaatcctggggcatttgttcagaatccttcaggagcc
cttcccaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaattattttca
aaactgctgaaaacaggaattctcaaattgtcccagcctgattcagctacaacacaagta
aatgaagttgctgctcaacctccccctgaagaggaggaggatcaaaatgaagatcaagat
gttccagatcttaccaattttacaatagaagaattgaaacaacgttatgatagtgttata
aatcgactctacactggtattcagtgttattcttgtggaatgaggtttaccacatcacag
acagatgtatacgcagatcacttggattggcattatcggcaaaatagaactgaaaaagat
gttagcagaaaagtcactcacagacgttggtattacagtctaacagactggatagaattt
gaggaaatagctgatctggaagaacgtgcaaagagccagttttttgaaaaggtacatgag
gaagttgtgcttaaaactcaggaggctgctaaagaaaaggagttccaaagtgtacctgct
gggccggctgggtcagttgagagttgtgaaatctgtcaagaacaatttgaacaatactgg
gacgaagaggaggaggagtggcatttgaaaaacgctattagagtagatggaaagatttat
catccatcatgttacgaagattatcaaaatacatcttcatttgattgtacgccatctccc
agcaagacaccagttgaaaaccccttgaacattatgttgaacattgtcaaaaacgaattg
caggaaccctgtgaaagtctccaagttaaggaagaacagattgataccccaccagcttgt
atagaggaaagcatagcaacacccactgaaattaaaacagaaaatgatacagtcgagtca
gtttaa
DBGET
integrated database retrieval system
