Talpa occidentalis (Iberian mole): 119261461
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Entry
119261461 CDS
T07495
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tod
Talpa occidentalis (Iberian mole)
Pathway
tod03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tod00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119261461 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tod03019
]
119261461 (MTREX)
03041 Spliceosome [BR:
tod03041
]
119261461 (MTREX)
03009 Ribosome biogenesis [BR:
tod03009
]
119261461 (MTREX)
03016 Transfer RNA biogenesis [BR:
tod03016
]
119261461 (MTREX)
Enzymes [BR:
tod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119261461 (MTREX)
Messenger RNA biogenesis [BR:
tod03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119261461 (MTREX)
Spliceosome [BR:
tod03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119261461 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
119261461 (MTREX)
Ribosome biogenesis [BR:
tod03009
]
Eukaryotic type
Pre-60S particles
Helicases
119261461 (MTREX)
Transfer RNA biogenesis [BR:
tod03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119261461 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119261461
NCBI-ProteinID:
XP_037386697
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTNATGTKKDKEKEKGKLKGPPGSAEKAGKRFDGKLQSESTNAG
KTKRDADFEGTDEPIFGKKPRIEESLTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEQQYNKIVIPNEESVVIYYKIRQQLSKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgctttcggagatgagctcttcagcgtgttcgaggacgattcgaccaatgcg
actggaaccaaaaaagacaaggaaaaggaaaaggggaaattgaaggggccacctgggtct
gcggaaaaggccgggaaacgttttgatggtaaattacaatcagaatccactaatgctggg
aaaaccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagccc
aggatagaggagtcattaactgaagacttaagtttggcagacttgatgcccagagtcaag
gtacaatctgttgaaactgttgaagggtgtacacatgaggttgcgctgcctgcagatgaa
gattatttaccacttaagcctcgagttggaaaagctgccaaggaatatccattcattctt
gatgctttccaaagagaagccattcagtgtgttgataataatcagtctgtgttagtgtct
gcacatacatcagcaggaaaaactgtatgtgctgagtatgccattgcattagccctaagg
gaaaaacaacgtgtgatatttaccagcccaattaaggctctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctctacagaggttct
gaagtaatgcgagaagttgcctgggttatatttgatgaaattcattacatgagagattca
gagcgtggtgtggtgtgggaagaaacgattattctgcttcctgacaatgtccactatgtc
tttctttcggctactattccaaatgcccgtcagtttgctgaatggatttgccatttacat
aagcagccttgtcatgtaatttacacagattataggcctactcctttgcaacactacatt
tttccagcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagggaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgacctggcaaaaggagat
caaaagggccggaaaggaggaacaaaagggccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaggattgtgaa
gcctatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtatttagtaatgcaattgattgcttatccgatgaagataaaaagctccctcag
gttgaacatgtgcttcctcttttgaagcgagggattggtattcatcatggtggtttactt
cctattttgaaagaaactatagaaattcttttttctgagggattaataaaggccttgttt
gccacagagacttttgcgatgggaattaacatgccagctagaactgttttatttacaaat
gctcgaaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgtgcaggaaggagggggatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagtccaacaattggaaaacaactacttaagggttcagctgatcctctaaat
agcgcttttcatttgacatacaacatggttttgaacctgctacgtgtggaagaaattaac
cctgagtacatgttggaaaaatctttctatcagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaacaacagtacaataaaatagtaataccaaatgaa
gaaagtgtcgtcatctattataagattagacaacagctttccaaattgggtaaagaaatt
gaagaatatattcacaaaccaaaatactgtttaccatttctacaaccgggtcgtttggtg
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttttcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttttg
cgctgtagcaaagagagcttgaagaattcagccactgaggctgcaaaaccagctaaacct
gatgagaaaggagaaatgcaggttgttccagttttggtgcatctcctttctgctattagc
agtgttcgactttacattcctaaagacctgcgaccagtggacaatagacagagtgtatta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcccttgttagatcctatt
gatgacatgggtattcaagatcaagggctgaaaaaagtcatccagaaagtagaggctttt
gaacatcgaatgtattcacatccacttcacaatgaccccaatctggaaacagtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgttctacagatggatgagctcaaatgtcgcaaacgtgttttaaggaga
ttgggctttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgaaata
agcagtgctgatgagctgcttctaaccgagatgatgttcaatggcctttttaatgacctg
tctgcagaacaggcaactgcactgttaagctgttttgtgtttcaagaaaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcagatgcaggaatgtgctaaa
agaattgccaaagtttcagcagaagccaagttggaaattgatgaagaaacttatctaagc
tcattcaaacctcacttaatggatgtagtatatacatgggcaaccggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgagacggctg
gaagaactgcttcgacagatgtgtcaagcagctaaagccattgggaacactgaactggaa
aataaattcgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttatag
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