Trabulsiella odontotermitis: QMG90_02080
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Entry
QMG90_02080 CDS
T09053
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
toe
Trabulsiella odontotermitis
Brite
KEGG Orthology (KO) [BR:
toe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toe03019
]
QMG90_02080 (csrD)
Messenger RNA biogenesis [BR:
toe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QMG90_02080 (csrD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
DUF418
Motif
Other DBs
NCBI-ProteinID:
WHP31762
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All DBs
Position
419635..421575
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLVGLAIFVTLVGCSLSFYNGIQIKLQHRVQAVAITLDNRLMTTPFDK
LRPQLDELLEPVDIVRLDFLVGGKPIFNHVRQVSYRPAGSSYQYRELEVSSLKNPGMTIH
VVYLDPMVNYFNSLSTTVPLTLAIAFMVLVIFFSVRWLRRQLAGQELLDSRSARILNGAR
GQQAKGSVHEWPARTSSALDMLLSEIQFASDQRSRMDTLIRSYAAQDTRTGLSNRLFFDN
QLATLLEDQEKVGAHGIVMMIRLPDFDLLRDNWGRTAAEEYLFTVINLLSTFILRYSGAL
LARYHRSDFAVLLPHRTLKEADSIASQLLKAMEALPTTKIRERDDMMHIGICAWRSGQST
NQVMEHAEAATRNAVLQGSNGWAVYDDSLPEKGRGNVRWRTMIEQMLTRGGPRFYQKPAV
TLEGRVHHRELMCRIYDGQEEVISAEYMPMVLQFGLSEEYDRLQITRLIPFLSFWPEENL
ALQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIFELAEADVCQHISRLQPVMRLISALG
VRVAVIQAGLTLVSTDWIQLLDVEIIKLHPGLVRNIEKRSENQLLVQSLVEACKGTSTRV
FATGLRRRGEWQVLTECGVTGGQGDFFAGSQPLDTSVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattttcggcttttgtcacgctgctggtcggtctggcaattttc
gtaaccctggtgggttgctcgctgagcttttataacgggatccagattaagctccagcac
cgcgtgcaggcggtcgcgatcacgctggataaccgcctcatgacgaccccgttcgacaaa
ctgcgtccgcagctggatgagctgctggagcccgtcgacatcgttcgtctcgactttctc
gtcggtggaaaaccgatatttaaccatgtccggcaagtcagctatcgtcccgccggcagc
agctatcagtatcgcgagctggaagtcagttcgctgaaaaacccgggcatgacgattcat
gtggtctacctggatccaatggtgaattatttcaattcattatcgacgacagtgccgctg
acgctggcgattgcctttatggtgctggtgatttttttctctgtgcgctggctgcgacga
caactggccgggcaggagttgctggattctcgttcggcaaggatcttaaacggcgcgcgc
ggtcagcaggcaaaaggctcggtacacgaatggcccgcccgcaccagcagcgcgctggat
atgctgctctccgagattcagtttgccagcgatcagcgcagccgcatggatacgctgatt
cgctcttatgccgcccaggatacgcgcaccgggctgagcaatcgcctgttcttcgacaat
caactggcgacactgctggaagatcaggaaaaggtcggagcgcacgggatagtgatgatg
atccgtctgccggatttcgaccttttgcgtgataattgggggcgaacagccgcagaagag
tatctattcaccgtaattaacctactttctacctttatattgcgctattcgggtgcgctt
cttgcgcgttatcatcgtagtgattttgcggtgcttttgccgcaccggacgttaaaagag
gcagacagcatcgccagtcagctgttgaaagccatggaagcgctgccgacgacgaaaatc
cgtgagcgtgatgacatgatgcatatcggcatctgcgcctggcggagcggtcagtcgacg
aaccaggtgatggaacatgccgaagcggctacccgtaacgccgtgcttcagggaagtaac
ggttgggccgtgtatgacgattcgctaccggaaaaagggcgcggcaacgtgcgctggcga
acgatgatcgaacagatgttgacccgtggcggtccgcgcttctaccagaaaccggcagtg
acgcttgagggtcgggttcatcatcgtgaactgatgtgtcgtatttatgatgggcaagaa
gaagtcatctcggcggaatatatgccgatggtattacagttcgggttgtcggaagagtat
gaccggttgcagatcacgcgcctgattccttttctctcgttctggccagaagaaaatctg
gcgttgcaggtaacggtggagtcgttgatccgcccgcgtttccagcgctggctgcgggat
acattaatgcaatgcgaaaaatcgcaacgaaaacgcattatttttgaacttgctgaggcg
gatgtttgtcaacatatcagccgtttacagcctgttatgcgtttaattagcgctttaggt
gtacgcgtcgctgtgatacaagcaggtttaacgctggtcagtacggactggatccagctt
ctggacgttgaaattattaagcttcatccaggactggtgcgtaatattgagaagcgaagt
gaaaaccagcttctggtacaaagtctggtggaagcctgtaaaggcacctcgacccgggtt
tttgccaccgggctacgccgccggggcgagtggcaggtactgacagagtgtggcgtcacg
ggggggcagggcgatttttttgcgggctcacagccacttgacaccagtgtgaaaaaatat
tctcaaagatactctgtttga
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