Trabulsiella odontotermitis: QMG90_09640
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Entry
QMG90_09640 CDS
T09053
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
toe
Trabulsiella odontotermitis
Pathway
toe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QMG90_09640 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toe03019
]
QMG90_09640 (rne)
03009 Ribosome biogenesis [BR:
toe03009
]
QMG90_09640 (rne)
Enzymes [BR:
toe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QMG90_09640 (rne)
Messenger RNA biogenesis [BR:
toe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QMG90_09640 (rne)
Ribosome biogenesis [BR:
toe03009
]
Prokaryotic type
rRNA processing factors
QMG90_09640 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WHP33138
LinkDB
All DBs
Position
complement(2016943..2020110)
Genome browser
AA seq
1055 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPASYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVSAIEARQGGVRCIIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEEMAMPSEEEPAERKRPEQPALATFAMPDVPPA
PPAETAAPAAKAAAPAAPKAPASPAEPGLVSRFFGALKNLFAGSEAPQEAEPAPVKKEEK
PERQQDRRKSRQNNRRDRNDRRDNRNDNGEGREENRRNRREKQQQNAETREARQQTTVDE
TEKAQNRDEQPQQPRRERNRRRNNDDKRQAQQEAKAQSRDEQPAVQETEQEERVQVMPRR
KPRQLTQKVRILSAEQEAAAAIADDITEQPQPVVTAQRTELAKIDLPAVIETPVEQDDNA
EARDTAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPEMASGKVWIRY
PVARPADEQIEQEETQQAAPVITDVQPDVAAVVADTALTPEEQPVVVEPQPVVSEPQEPV
VETTHPDVIAAPVTEQPHLIAAEDDVVAEEVAAEVEAAVESADVTNEAPVEEAPVEAAAE
PVVAEPVTEPVVTAPVEPVEEVKPAAVVTEQTAPADNHHATAPMTRAPAPEYTPEPPRHS
DWVRPSFAFEGKGAAGGHSATHQAQSGPTRPQPTE
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaagagttgcgtgtcgcccttgttgat
gggcagcgtctgtacgatctggatatcgaaagcccaggacacgaacagaaaaaagcgaac
atctacaaaggtaaaatcacccgcattgaaccgagtctggaagccgcatttgttgattac
ggcgctgaacgtcacggttttctcccccttaaagaaatcgcccgcgagtattttcccgcc
agctataacgctcatggccgccccaacatcaaagatgttctgcgcgaaggtcaggaagtt
atcgttcagattgataaagaagaacgtggtaataaaggcgctgcattaacgacctttatt
agcctggcggggagttatctggtgctgatgccgaataacccgcgtgcgggtggcatttca
cgccgtatcgaaggtgatgaccgtaccgaactgaaagaagcgctgtccagccttgaactg
ccggacggcatgggtcttatcgtgcgtaccgccggggtgggtaaatccgccgaagcgttg
cagtgggatctgagcttccgtctgaagcactgggaagctatccagaaagccgcagaaagc
cgcccggcgccgttcctgatccatcaggaaagcaacgttatcgttcgcgccttccgtgac
tatctgcgccaggacatcggcgaaatcctgattgataacccgaaagtgcttgagctggcg
cgccagcacatcgcggcactgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaattccgctgttcagccactaccagattgaatcgcagatcgaatccgcattccag
cgtgaagtgcgtctgccgtccggtggttctatcgttatcgactccaccgaagcgttaacc
gcaattgatatcaactccgcccgcgcgacccgcggcggcgacatcgaagagacggcgttt
aacaccaacctggaagcggcagacgaaatcgcacgtcagttgcgtctgcgtgaccttggc
ggcctgatcgttatcgactttatcgatatgaccccggtacgccaccagcgcgcggttgaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcccgcattcagatcagccatatttcg
cgcttcggcctgctggaaatgtcccgtcagcgtctgagcccgtcgctgggtgaatccagc
catcacgtctgcccgcgctgtagcggcaccggcaccgtccgtgataacgaatccctgtcg
ctctctatcctgcgtctgattgaagaagaagcgctgaaagagaacacccaggaagtgcat
gcgattgtccctgtgccgattgcgtcctacctgctgaacgaaaaacgtagcgccgtaagc
gccattgaagcccgtcagggcggcgtacgctgcattatcgtgccgaacgatcaaatggaa
acgccgcactactccgtgctgcgcgtacgtaaaggcgaagaaacgccaaccctgagttat
ctgctgccgaaactgcacgaagaagagatggcgatgccgtcggaagaagaaccggctgag
cgtaagcgcccagagcagcctgctctggcgaccttcgcgatgcctgatgttccgccggcg
ccgccagccgaaaccgcggcacccgcggcgaaagctgccgccccggcagcgccaaaagcc
cctgcctcgccggcagaaccgggtctggtgtctcgcttcttcggcgcgctgaaaaatctt
tttgccggcagcgaagcgccgcaggaagctgaaccggcgccggtgaagaaagaagagaaa
cctgagcgtcagcaggatcgtcgtaaatcacgtcagaacaaccgtcgcgaccgtaatgat
cgccgtgacaaccgcaatgacaacggcgagggtcgtgaagagaaccgccgtaaccgtcgc
gaaaaacagcagcagaacgccgaaacgcgtgaagcccgtcagcaaacgacggttgatgaa
acggaaaaagcgcagaaccgtgacgagcagccacagcaaccgcgtcgtgagcgtaaccgc
cgtcgtaacaacgacgacaaacgccaggcacagcaggaagccaaagcgcagagccgtgac
gaacagccagcagtgcaggagaccgaacaggaagaacgcgttcaggtcatgccgcgccgt
aagccgcgccagttgacgcaaaaagtccgcatcctctccgccgagcaggaagccgctgct
gcaattgccgatgacatcaccgagcagccgcagccggtcgtcactgcgcagcgcactgaa
ctggcgaaaatcgatctgccagcggtgattgaaacgccagttgagcaggacgacaacgct
gaagcgcgtgataccgccggtatgccgcgccgttcacgccgttcaccgcgtcacctgcgc
gtcagcggccagcgccgccgtcgttaccgtgacgagcgttacccactgcagtcgccgatg
ccgctgaccgtggcctgcgcctcgccagaaatggcttccggtaaagtgtggatccgctac
ccggttgcccgtccggctgatgagcaaatcgagcaggaagaaacgcagcaggccgcgccg
gttatcaccgatgttcagcctgacgttgccgctgttgtggcagataccgcgttaacgccg
gaagaacagccggtagtggttgaaccgcagccagtggtaagcgagccgcaggagccggtg
gttgaaaccactcatcctgacgtcattgccgcgccggtgaccgagcagccgcacctgatc
gcagcagaagacgacgtggtcgctgaagaagtggctgctgaagtcgaagccgcggtggaa
tctgctgacgtcaccaacgaagcgccggttgaagaagcgccggttgaagctgccgctgag
ccagtcgtggctgagccggttactgaacctgttgtcaccgcgccggtcgagcctgttgaa
gaggtaaaacctgccgcagtggtaaccgaacaaaccgcgcctgctgacaatcatcacgcc
accgcgccgatgacccgtgccccggctccggaatatacgccggaaccgccgcgtcacagc
gactgggttcgtccgtcctttgctttcgaaggtaaaggggccgctggcggtcacagtgcg
acgcaccaggcacagtccggtccaacacgtccgcagccgactgagtaa
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