Thermoleptolyngbya oregonensis: HNI00_06115
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Entry
HNI00_06115 CDS
T09452
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNI00_06115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tog03019
]
HNI00_06115
03009 Ribosome biogenesis [BR:
tog03009
]
HNI00_06115
Enzymes [BR:
tog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNI00_06115
Messenger RNA biogenesis [BR:
tog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNI00_06115
Ribosome biogenesis [BR:
tog03009
]
Prokaryotic type
rRNA helicases
HNI00_06115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
UvrD-helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOB42774
UniProt:
A0AA97BCB3
LinkDB
All DBs
Position
complement(1420893..1422311)
Genome browser
AA seq
472 aa
AA seq
DB search
MTLSFTSLGLSEARARHLEKAGFTAPTPIQAQAIPHLLSGRDVVGLAQTGTGKTAAFSLP
ILEQIDVNNNAVQALILTPTRELAIQVYQSIRTLTDDRRLKILPTYGGQSIDLQISRLQR
GVQIIVGTPGRVLDLLKRGDLKLNKLGWLVLDEADEMLNMGFIQDVEKILSQSPPERQTA
FFSATMDPSIRELAAKFLRSPVTVSIEQPKAAPTRINQVVYMVPRGWTKARALQPILELE
DPESALIFVRTRKAAADLTRQLQAAGHSVDEYHGDLSQSQRERLLLRFRQRQVRWVVATD
IAARGLHVDDLSHVINYDLPDSVESYVHRIGRTGRAGKEGTAITLIQPLDKRKLRDIERH
IRQQLQTGTIPTRAQIEARYLEKLQGQLREALVGDRLASFLPIVTQLSEEYDMRAIAAAA
LQMAYDQTRPAWMRGDHAYSDDVPVEESRPRSDYGSGPKPKPIKRSKTSVNE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttcattcactagtctgggtttgtctgaggcgcgggcgcgccatctagaaaaa
gctggatttaccgcaccgacaccgattcaggcgcaggcaattccccatctgctgtcgggg
cgcgacgtggtgggtctggcccagacagggacgggcaaaacggcggccttttcgctgccc
attttggagcagattgacgttaacaacaacgcggtgcaggcgctgatcctgacaccgacc
cgcgagctggcgatccaggtctatcagtcgattcggacactgacggacgatcgccgcctg
aaaattttgccgacctacggcggacagtccatcgacctgcaaatcagccgcctccagcgg
ggagtgcaaattatcgtgggcacgcctggacgagtgctggacttgctgaagcggggcgac
ctgaagctgaacaagctgggctggctggtgctggatgaagccgacgagatgctgaacatg
ggctttattcaagacgtggagaaaatcctgagccagtcgcctccagagcggcagaccgcg
tttttctcggcaacaatggacccgtcgattcgagaactggcggccaagtttttgcgatcg
cccgttaccgtcagcatcgagcagcccaaggccgccccgacgcggattaatcaggtagtc
tacatggtgccgcggggttggacgaaagcccgcgccctccagcccattttggaactggaa
gatcccgaatcggcattgatcttcgtccgcacgcgcaaagccgccgcagacctaactcgc
caactgcaagccgccgggcatagcgtcgatgagtatcatggcgacctcagccagtctcag
cgggaacggctgctgctgcgctttcggcagcgtcaggtgcgctgggtagtagcgacggac
attgccgctcgcgggctgcatgtggacgatttgagtcatgtgattaactacgacctgccc
gacagcgtggaaagctacgtccaccggattggtcgcacgggtcgtgcgggcaaagagggc
acggcgattacgctaattcagccgctagacaagcgcaagctgcgggacattgagcggcac
atccgccagcagttgcaaacgggcacgatcccgactcgcgcccagatcgaagcccgctat
ctagagaagctccaggggcaactgcgggaagcgctggtgggcgatcgcctcgcctccttc
ctgccgattgtgacgcaattgagtgaggagtacgacatgcgggcgatcgccgctgcggcc
ttgcagatggcctacgaccagacgcgccccgcctggatgcgtggcgaccacgcctactcc
gacgacgtacccgtggaagagagccgtccccgcagcgactatggcagcgggcccaagccg
aagcccatcaagcgctccaaaacgtcggtcaacgagtag
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