Thermoleptolyngbya oregonensis: HNI00_08860
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Entry
HNI00_08860 CDS
T09452
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNI00_08860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tog03021
]
HNI00_08860
03400 DNA repair and recombination proteins [BR:
tog03400
]
HNI00_08860
Enzymes [BR:
tog01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNI00_08860
Transcription machinery [BR:
tog03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNI00_08860
DNA repair and recombination proteins [BR:
tog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNI00_08860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Biotin_lipoyl_2
RPOC_hybrid
RPN1_C
MethyTransf_Reg
Motif
Other DBs
NCBI-ProteinID:
WOB43255
UniProt:
A0AA97B9U2
LinkDB
All DBs
Position
complement(2031775..2035779)
Genome browser
AA seq
1334 aa
AA seq
DB search
MTEQSSIQRSEKPVVFRNRVIDKKQLRRLIAWAFTHYGTARTAQVADELKDLGFKFATRA
GVSISVDDLQVPPSKRKLLDEAEDEIRKTEERYTRGDITEVERFQKVIDTWNSTNEDLTS
AVVRNFRESNPLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIDLPIKTNFREGL
TVTEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRELDCNTERGIPIRSMTD
GERVLIPLKDRLLGRVPAEDVIHPETGEVIVPRNEPISDDMAEEIGRAKVEQVVVRSPLT
CQASRSVCQRCYGWSLAHAYLVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGGTVTGEQAP
TIRASFNGTVHLKLKRKDEVLRSRPFRTRHGEDALIIESPSVEVIVEQGSRKESHTITQG
SILFAQEGESVVADQILAELPATGRVRKVTEKASKDVASDLAGEVKFADLVPEEKRDRQG
NITRIAQRGGLLWVLSGEVYNLPPGAEPVVKNGDRVEANSILAKTKLVTENGGTVRLPQD
GEGKAGREVEIITASVLLDQARVIAESQQGREHYIIETQHNQRFSLIATPGTKVVNKQVV
AELIDDRYRTQTGGIIKFSGIELEKRGKAKQGYEVVKGGTILWIPEESHEVNKDISLLLV
EDGQFVEAGTEVVKDIFCQSSGVVEVTQKNDILREIVIKPGELHMVDNPEAVMSRNGTIA
NPGEELLPGLELTDLRYVEYVDSPEGPALLLRPVTEFAVPDEPSVPSQSSTSEESGRAIQ
LRAVQRTMYKDGERVKSVEGLELLRTQLVLEIDQDAQLAADIELVPDDSDPELLRLQLVI
LESLVIRRDVPADQTQGSTLTTLLVKDGDQISPGDEVARTEILCKEGGEVRGVGSNESAR
RILVVRESDKLTVETEGKSPTVKAGDLLVAGAAIADGVTVEESGQVLSVSDSQVQLRLAR
PYRVSAGAVLHIDDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACVLA
RRPGTAQVVYSDDDTVQVKVVEADGVITEYPIGPGQNMLIIDGQEVGAAEPLTDGPANPH
EILEIFFDLHRETLGVHEASLISLEKVQTFLVNEVQSVYQSQGIEISDKHIEVIVRQMTS
KARVDDGGDTTMLPGELVELHQIQQVNEAMSITGGAPAEYTPVLLGITKASLNTDSFISA
ASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNAYEESTSVDLDALDDMGL
SDVVLDDLTARSYDLDSGFDVFPPPEGLGMREGTEFPRPSHGFGDDAFSGVLEDDELADE
YADDDDDDDDEDED
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcaaagttcgattcaaagatccgaaaagcccgtcgtgtttcgcaatcgcgtg
atcgataaaaagcagttgcggcgactgattgcctgggccttcacccactacgggactgcc
cgcacagcacaggtagccgacgagctaaaggatttgggcttcaagtttgctacgcgggcg
ggggtgtcgattagtgtagacgacttgcaggttccgcccagcaagcgcaaactgctcgac
gaagccgaggacgaaatccgcaaaaccgaggagcgctatactcgcggcgacattactgaa
gtagagcgcttccagaaggtaatcgacacctggaacagcaccaacgaagacctaaccagc
gcggtggttcgcaacttccgcgagagcaacccgctcaactcggtctacatgatggcgttt
tctggcgcacggggaaacatctctcaggtgcgtcagttggtggggatgcgcggcctgatg
gccaatccgcagggggaaattattgacctgcctattaagaccaacttccgcgaagggctg
acggtgacggagtacatcatttcctcctacggggcgcggaaaggactggtggacacggcg
ctgcggacggcagactccgggtatctcacccgtcgtctggtggacgtatcgcaggacgtg
attattcgggagctagactgcaacacggagcgcggcattcccatccgcagcatgacagac
ggggagcgggtgctgattcctctgaaggatcggctgctgggtcgcgtgcctgcggaggat
gtgattcatcccgaaacgggtgaagtcattgttcctcgcaacgagccaatttccgacgat
atggcggaggaaattggtcgggctaaggtagaacaggtggtcgtgcgatcgcccctgacc
tgccaagcctcccgttccgtttgccagcgctgctatggctggagcttggcccacgcttac
ctggtggatatgggcgaagccgtgggcatcattgcggcgcagtcgattggcgaaccgggg
acgcagttgaccatgcggacgttccacacgggcggcacggtcacaggcgaacaggctccg
accatccgcgccagcttcaacggcacagttcacctgaagctaaagcgtaaggacgaagtg
ctgcgctctcgccccttccgcacccgccacggcgaagacgcgctgattatcgagtcgccc
tcggtggaagtgatcgtggaacaaggcagccgcaaggagtcccacacgattactcagggt
tccatcctgtttgcccaggaaggcgagtcggtcgtggccgatcaaatcctggcagaactg
cccgcgacggggcgcgtccgcaaggtaacggaaaaagccagtaaggacgtggcgtctgac
ctggctggcgaggtgaaatttgccgacctcgtgcccgaagagaagcgcgatcgccagggc
aacatcactcgcattgcccagcggggcggtttgctgtgggtgctgtcgggcgaggtgtat
aacctgccgccgggcgcagaacctgttgtaaagaatggcgatcgcgtcgaagccaacagc
atcctcgccaaaaccaagctcgtcaccgaaaatggtggtacagtgcgcctgccccaggat
ggcgaaggcaaggcggggcgcgaagtcgaaatcatcaccgcgtcggtgctgctggatcag
gcccgcgtcatcgccgaaagccagcaaggccgcgaacactacatcatcgaaacccagcac
aaccagcgattctccctgattgccacacccggcacaaaggtagtgaacaagcaggtcgtg
gcggaactgattgacgaccgctaccgcacccagacgggcggcatcatcaagttctctggc
atcgagctagagaagcgcggcaaagccaaacagggctatgaagtcgtcaagggcggcacg
attctctggattcctgaagaatcccacgaggtgaacaaagacatttcgctgctgctggtc
gaagacgggcagtttgtggaagcgggcaccgaagtggtcaaagacatcttctgccaaagc
agcggcgtagtggaagtgacccaaaagaacgacattctgcgggaaatcgtgatcaaaccc
ggcgaactgcacatggttgacaacccggaagccgtcatgagtcgcaacggcacgatcgcc
aaccccggcgaagaactgctgcccggtcttgagctgacagatctgcgctatgtcgaatat
gtcgattcgcccgaaggcccagcactgctgctgcgtccggtgacagagtttgctgtgccc
gacgaaccttcggtgcccagccagtcttcgaccagcgaggagtcgggtcgcgcgatccaa
ctccgggcagtgcagcggacgatgtataaggacggggagcgcgtcaagtcggtcgaaggg
ctggaactgctgcggactcagctagtgctggagattgatcaagatgcacaactggccgcg
gatatcgagctagtgcctgatgactctgatccggaactgctgcgcctccagttggtgatt
ctggaatcgctggtgattcgtcgcgacgtgcccgccgaccagacccagggcagcacgcta
accacgctgctggtgaaagacggggatcaaatctcgccaggagacgaagtggcccgcacc
gagatcctgtgtaaggaagggggcgaggtgcgcggcgtgggcagcaacgaatcagcccgc
cggattctggtcgttcgcgagtcggacaagctgactgtcgagacggagggcaagtccccc
actgtgaaagcgggcgacctgctggtggctggagcggcgatcgccgatggggtcaccgtt
gaagaatcgggacaagtcctctcggttagcgattcccaggtgcaactgcgactggcacgc
ccctatcgcgtgtcagcgggtgccgtgctgcacatcgacgacggtgatttggtgcaacgg
ggcgacaaccttgtgctgctggtgtttgaacgcgccaagaccggagacatcatccagggt
ctaccccggattgaggaactgctggaagcccgcaagcccaaagaagcctgcgtcttggca
cggcgaccgggcacagcgcaggtagtctacagcgacgacgacacagtgcaggtgaaggtc
gtcgaagcggacggcgtgatcaccgagtatcccatcgggccgggtcagaacatgctgatc
atcgacgggcaggaagtgggtgccgctgaaccgctgacggacggccctgctaacccccac
gaaattctggagatcttctttgatctacatcgggaaacgctgggcgttcacgaagcctcg
ctgatcagcctggagaaggtgcaaaccttcctggtaaacgaagtgcagtcggtgtatcag
tcgcaggggatcgaaatttcggataagcacatcgaggtaattgtgcgccagatgacctcc
aaggcgcgggtcgatgacgggggcgacaccaccatgcttccgggtgaactggtggaactg
caccagattcagcaggtgaacgaggcgatgtcgattacgggcggtgcgccagcggaatat
accccggtgctgctggggatcaccaaggcctcgctgaacaccgacagctttatctcggcc
gccagcttccaggaaacgactcgtgtgctgactgaagcagcgatcgaaggcaagtcggac
tggctgcggggtctgaaggaaaacgtgatcattggtcgtctgattccagcgggcacgggc
ttcaatgcctacgaagagtccactagcgttgacctcgacgcgctggacgacatgggactg
agtgatgtggtgctggatgacctgaccgcccgcagctatgacctagacagcggctttgac
gtgtttccgccgccggaaggcctgggaatgcgagaagggactgagtttccgcgcccgtcg
cacggctttggtgacgatgccttctctggtgtccttgaggacgatgagctggccgacgag
tacgccgacgacgatgatgatgacgacgacgaggacgaagactag
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