Thermoleptolyngbya oregonensis: HNI00_12440
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Entry
HNI00_12440 CDS
T09452
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tog
Thermoleptolyngbya oregonensis
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tog03009
]
HNI00_12440 (rlmD)
Enzymes [BR:
tog01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HNI00_12440 (rlmD)
Ribosome biogenesis [BR:
tog03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HNI00_12440 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_15
Methyltransf_4
Cons_hypoth95
MTS
RrnaAD
AAA_27
Methyltransf_12
N6_N4_Mtase
PrmA
Methyltransf_23
DOT1
Motif
Other DBs
NCBI-ProteinID:
WOB43870
UniProt:
A0AA97BA63
LinkDB
All DBs
Position
complement(2901471..2902880)
Genome browser
AA seq
469 aa
AA seq
DB search
MSDPLAQPAQPNTTPRWRQGELVELTITDLSNSGDGVGRVDGRVVFVPDTAVGDRLIARL
IRVKPQFAQGKLHELLEPSGDRIRPACIVADKCGGCQWQHLSYAAQLVAKQNLVTQDLER
IGGFANPPVSPILPLSPSPAHSLNYRNKATYPLDRGESGQVRAGYYQKGSHQLVNLNQCP
IQDARLNPLLAEVKQDIQTRGWSIYDERLHRGKLRHLGLRIGRHTGEMLLTLVSTDAGLV
GLAEQAEAWLQRYPDLVGVALNLNPAQTNVIFGPETRCIAGQNALRERFAGLEFQIQPTT
FFQVNTEQAEALLGAIASELNLQGDEILVDAYCGIGTFTLPLAKQVKRAIGIELHPESIQ
QAWTNAYQNNIANVMFQAGTVEELLPKLDEQPDVVLLDPPRKGCDALVLETLLSQLPHRI
AYVSCNPATLARDLKRLCANGTYRLARAQPVDFFPQTPHVECVAFLEKL
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaccccctcgcccaaccagcccagcccaataccaccccccgctggcggcagggc
gagttggtggaactgacgattactgacctgagcaacagcggcgacggcgtggggcgcgtg
gatgggcgcgtggtgtttgtgccggatacggccgtgggcgatcgcctcatcgcccgcctg
atccgcgtcaagccacagttcgcccagggcaagctgcatgagctattggaaccatcgggc
gatcgcatccgtcccgcctgcatcgtggccgacaagtgcggcggctgccagtggcaacac
ctcagctatgccgcccagcttgtcgccaagcaaaacctcgtcacccaagacctagagcgc
atcggcggctttgccaatcccccagtctcccccattctgcccctttccccctcccccgcg
cattccctcaactaccgcaacaaagccacctaccccctcgaccggggcgagtcgggccag
gttcgcgctggctattaccagaagggcagccaccagttggtgaatctaaaccagtgcccg
attcaggatgcgcggctgaatcccttgctggcagaggtgaagcaggatattcaaacccgc
ggctggagcatctacgacgagcggctgcatcggggcaagctgcgccatctggggctgcgg
attgggcgacacactggggaaatgctgctgacgctggtgagtaccgacgcgggtctggtg
gggctggcggagcaggcagaagcgtggctccagcgctatcccgacctggtgggcgtggcg
ctgaacctaaacccagcgcagacgaatgtgatttttggcccagaaacccgctgcattgca
gggcagaacgctttgcgagaacgctttgcagggctggagtttcagattcagccgacgacg
ttttttcaggtgaacacggagcaggcggaggccctgctaggggcgatcgcctccgaactc
aacctccagggcgacgaaatcctagtagatgcctactgcggcatcggcacgtttaccctg
ccgctggcaaagcaggtcaagcgggcgatcggcatcgagctacatccagagtcgattcag
caagcctggaccaatgcctatcaaaacaacattgccaacgtgatgttccaggcgggcacg
gtcgaagaactgctgcccaagctggacgaacagccggatgtcgtgctgctcgatccgccg
cgcaagggctgcgatgccttggtactggaaacgctgctcagccaactgccgcaccgcatt
gcctacgtgagctgcaacccggcaaccctagcccgcgacctgaagcgactctgtgccaac
ggaacctatcgcctcgcccgcgcccagcccgtcgatttctttccgcaaacgccccatgtc
gaatgtgttgcgtttctagagaaattgtaa
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