Thermoleptolyngbya oregonensis: HNI00_14375
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Entry
HNI00_14375 CDS
T09452
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNI00_14375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tog03019
]
HNI00_14375
Enzymes [BR:
tog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNI00_14375
Messenger RNA biogenesis [BR:
tog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNI00_14375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
AAA_22
DEDD_Tnp_IS110
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
WOB44201
UniProt:
A0AA97BDF8
LinkDB
All DBs
Position
complement(3388559..3389992)
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AA seq
477 aa
AA seq
DB search
MSFSDLGLTDEIVRAVTARGYTQPTPIQAQAIPAILAGHDLLASAQTGTGKTAGFTLPIL
HLLAASGRGASPGKPMPRVPVRSLVLTPTRELAAQVEESIREYGQFLPLRSTVVYGGVGM
QPQVQRLRGRVDLLVATPGRLLDHVQQGTVDLSRVEILVLDEADRMLDMGFLPDIRRVLA
QLPKQRQNLLFSATFSDEIKKLASGLLHNPVTIEVAPPNATADLVAQKVYPVDRHKKRQL
LTHLIQQNNWFQVLVFTRTKHGADHLVKHLGNHQIPAMAIHGNKSQAARTRALAQFKDGS
LQVLVATDIASRGIDISELPHVINFELPHVPEDYVHRIGRTGRAGTEGEAASLVCVDELK
LLADIEKLIRRSLPQEIVPGFEPDLNAKPEPIPNGRNRQAGGRGRSGGGSGGGSGGGSGQ
ARSHSDRAPGRAAAKAGLSGRGDRPKPGSNTDSADPGRRRSRPGSPGSRRSARRPAS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttctgatctcggtctgaccgatgaaatcgtccgtgcggtgactgcacgcggc
tacactcagccgactccgattcaagcacaagccattcccgccatattagcggggcacgac
ctgctggccagcgcccaaacgggcacagggaaaaccgctggattcacactgccgattctg
cacctgctggcggcatcggggcgtggtgcttctcctggcaagcccatgccgcgcgttccc
gtgcgatcgctcgtcctcacgcccacccgcgaactggccgcccaggtcgaagaaagcatt
cgggagtatggccagtttttgccgctgcgctccaccgttgtctatggcggcgtgggaatg
cagccccaagtgcagcggctacgcggccgtgttgatctgctggtggccacgccagggcga
ctgctagaccatgtgcagcagggcacagtggatctgtcgcgggtggaaattttggtgttg
gacgaagccgatcgcatgttggatatgggctttttgcccgatattcgccgcgtcctggcg
caactacccaaacagagacagaatttgctgttttctgccacattttccgatgaaatcaag
aaactagccagcgggctgcttcataatcccgtcacgattgaagtggcaccgcccaacgcc
acggctgacttggtggcgcaaaaggtgtatcccgtcgatcgccacaaaaagcgccagctc
ctgactcacctgattcagcagaacaactggtttcaagttctggtgtttacccgcaccaag
cacggcgcagaccatctggtaaagcatctgggcaatcatcagattcccgcgatggcgatt
catggcaacaaaagtcaggccgcccgcactcgcgctctggctcagttcaaagacggcagc
ctgcaagtgctggtggcaacggacattgcctctcgcggcatcgacattagcgaactgccc
catgtgattaacttcgagttgccgcatgtgccagaggactatgtgcatcggattgggcgc
acggggcgggcaggcaccgagggcgaggcagcctcgctggtctgcgtagacgagctaaag
ctgctggcggatatcgaaaaactgatccggcgatcgctccctcaggaaatcgtccccggc
tttgaacccgacctgaacgccaagccagaacccatccctaacgggcgcaatcgtcaggcg
ggcgggcgcgggcgatcgggcggcgggtcggggggcggctcaggtggcggcagcgggcaa
gcccgttcgcattctgacagagcgccgggtcgtgcggctgccaaggctggcctgtcgggc
cggggcgatcgccctaaacccggcagcaacacagacagcgccgatcccggccgccgccga
tctcgccctggctctccgggttcccgtcgttctgcccgtcgccccgccagctaa
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