Thermoleptolyngbya oregonensis: HNI00_20560
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Entry
HNI00_20560 CDS
T09452
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tog
Thermoleptolyngbya oregonensis
Pathway
tog03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tog00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNI00_20560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tog03019
]
HNI00_20560
03400 DNA repair and recombination proteins [BR:
tog03400
]
HNI00_20560
Enzymes [BR:
tog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNI00_20560
Messenger RNA biogenesis [BR:
tog03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNI00_20560
DNA repair and recombination proteins [BR:
tog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HNI00_20560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WOB45256
UniProt:
A0AA96Y6M2
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All DBs
Position
4930538..4932010
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AA seq
490 aa
AA seq
DB search
MHLTDPVYAPEWARVRATFQQVWGYKDFRPPQDDIVRSLLLGQDALVVMPTGGGKSICFQ
LPALLQAGLTLVVSPLVALMENQVQELRDKRLPAALLHSELPPRQRQQTLWQLEHGRLRL
LYLSPETLLSASVWKLLSQPQVQLRGLILDEAHCLVQWGDSFRPAYRRLGAVRPALLAHK
PAGTSLAIAAFTATADPSAQRTIREVLGLQQPQVFLQNPYRANLALSVQTVWSPRGRRRS
LWRFIRARRGKAGLVYVRSRREGEELADWLTQEGFPTAAYHAGLGPTQRRRIEQAWLGGE
MPFVVCTSAFGMGINHPHIRWVLHYHAPLLLSEYVQEVGRAGRDGQPAEALTLVSDRPGW
LNPDDRQRQQFFTEKARSQHQTAQSLIRKLPKAGPVAEVARQFPDGAIALALLHRNGQLV
WDNPFHYRILPGVTPQPFQADPAIRQMQDYLYTRECRWRLLLRSFGFAKEAEGLCCQTCD
RCRASASAAL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaccgaccctgtttatgcgccagagtgggcgcgtgtccgggcaacgtttcag
caagtttggggctataaggactttcgtcccccgcaggacgacatcgtgcgatcgctcttg
ttagggcaggatgcgctggtggtgatgccgacggggggtggcaagtcgatttgcttccag
cttccggccctgctgcaagcggggttgacgctggtggtgtcgccgctggtggcgctgatg
gaaaaccaagtgcaggaattgcgagacaagcggctgcccgcggccctgctgcatagcgaa
ctgccgccccgccagcgccagcaaacactatggcaattggaacacggacggctgcgactc
ttgtatctgtcgccggagacgctgctgagtgcctccgtgtggaagctgctgagccagccg
caagtgcagcttcgcgggctgattttggatgaggcgcactgtctggtgcagtggggcgac
tcgtttcggccggcctatcggcggctgggagcggtgcgtccagcgctactggcccacaaa
cccgcaggaacgtccctggcgatcgccgcttttactgccaccgccgacccctccgcccag
cgcaccattcgagaggtgttggggctacaacagccgcaggtctttctgcaaaatccctac
cgggcaaacctggcgctgtcggtgcaaaccgtgtggagtccacgcggtcgcaggcgatcg
ctctggcgatttatccgggcgcggcggggcaaggctgggctggtctacgtgcgatcgcgc
cgggagggcgaggaactggcggactggctaacccaggaaggctttcccacggcggcctac
catgcgggactgggcccaactcagcggcgacggattgagcaggcgtggctgggtggagaa
atgccgtttgtggtttgcacaagcgcgttcggcatgggcattaaccatcctcacatccgc
tgggtgctgcactatcacgcgcccctgctgctgagcgagtatgtgcaggaggtggggcgg
gcaggacgcgacggccaacccgccgaggcactgacgctggtgagcgatcgccccggttgg
ctaaacccagacgatcgccagcggcagcagttttttaccgaaaaagcgcgatcgcagcac
caaactgcccaatcgctgatccgcaagctgcccaaagcagggcccgtggccgaggtggcc
cgccagtttcccgatggggcgatcgccctggccctgctccaccgcaacggtcagttggtc
tgggacaatccgtttcactaccgcatcttgcctggcgtgacaccgcagcccttccaggca
gaccccgccatccgccaaatgcaggactatctctatacccgcgagtgtcgctggcggctg
ctgctgcggagctttggctttgcgaaggaagcagaggggctgtgctgccaaacgtgcgat
cgctgtcgggctagcgcatcggcagcgttataa
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