Tolypothrix sp. PCC 7601: HG267_18965
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Entry
HG267_18965 CDS
T11260
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
toi Tolypothrix sp. PCC 7601
Pathway
toi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
toi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HG267_18965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
toi03019
]
HG267_18965
03009 Ribosome biogenesis [BR:
toi03009
]
HG267_18965
Enzymes [BR:
toi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HG267_18965
Messenger RNA biogenesis [BR:
toi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HG267_18965
Ribosome biogenesis [BR:
toi03009
]
Prokaryotic type
rRNA helicases
HG267_18965
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
Sigma70_r4
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
UYD31233
LinkDB
All DBs
Position
complement(4623315..4624850)
Genome browser
AA seq
511 aa
AA seq
DB search
MNLSFQELGISQERVEQLEKIGFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
ILERLDVNQRAVQALVLTPTRELAMQVHDAIAQFIGDEGLRVLAIYGGQSIDRQILQLRR
GVHMVVGTPGRVIDLLDRGCLKLDQVKWFVLDEADEMLSMGFIDDVIKILSQAPEERQTA
LFSATMPPSIRQLVNKFLRSPATVTVEQPKAAPTKINQVAYLIPRHWTKAKALQPILEME
DPESALIFVRTRRTAAELTSQLQAAGHSVDEYHGDLSQQARERLLSRFRNRQVRWVVATD
IAARGLDVDQLSHVINYDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQVFERH
NRQSWQLLSIPTRAQIEARHINKLQEQVREALAGERLASFLPIVSELIEKYDAQAIAAAA
LQIAYDQTRPAWLSSDIEIPQEDNLPTPKPKLVKQRRDGSGERSRSNWSKSDNIGEDERR
STPKPKLRAGRRDASPVNHKLGSSAARESAS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttcgtttcaagaactaggcatttcacaagaacgtgttgaacaactagaaaaa
attggtttcaccacaccaaccaatattcaaactcaagcaattccccaactgctagctgga
cgcgatgtggttggacaatctcaaaccggaactggtaaaaccgcagctttttcattgcca
attctagaacggctagatgtgaatcaaagagccgtgcaagcactggtgttaacaccaact
cgtgaattagccatgcaagttcacgatgcgatcgcccaatttattggtgatgaaggattg
cgggtattagcaatctacggtggtcaatcaattgatcgccaaattttacaactgcgacgt
ggtgtccacatggttgtgggtactcccggacgagtaattgacttgctagatcgtggttgt
ttgaagctcgatcaagtgaagtggtttgtgttggatgaagccgatgaaatgttgagcatg
ggctttatcgatgacgtaattaaaatcttgtcccaagcgccagaagaacggcaaacagcc
ctattctcagcgactatgccgccatcaattcggcaattggtcaacaaatttttgcgatcg
cctgcgacagttaccgtcgaacagccaaaagctgctcccaccaaaattaatcaggtagct
tacctaattcctcgccactggacaaaagccaaagctttacagccaattctggaaatggaa
gatccagaatcagcattgatctttgtccgtaccagacgcaccgcagccgaacttaccagt
cagctgcaagcagcaggtcacagtgtcgatgaataccacggtgatttatctcaacaagcg
agagaacgcttactcagccgcttccgcaatcgccaagtccgctgggtagtagcaaccgat
attgcagctcgggggttagatgtagatcaactatctcatgtgatcaactacgacttaccc
gatagcgtagaaacctacgtccaccgtattggtcgtactggtcgtgctggtaaagaagga
acagccatttcactagtacaaccatttgagcgccgcaagcagcaagtctttgaacgccat
aaccgtcaaagttggcaattgctttcaatccccaccagggcacaaattgaagcgcggcac
atcaataaactacaagagcaagttagagaagctttagctggcgaacgcctagcttcattc
ttgcccatagtcagcgaactgatcgaaaaatacgatgctcaagcgatcgcagctgcagca
ttgcaaattgcttacgatcaaactcgtccagcttggttaagttcagacattgaaattccc
caagaagacaacctcccaactcctaaacccaagttggtaaaacagcgtcgtgatggttct
ggcgagcgttcccgttccaattggagcaaatcagataacattggcgaagacgaaagacgt
tctactcccaagccaaaattgcgcgcaggccgtcgtgatgcttccccagttaatcacaag
ctaggttcatctgcagctagagaatctgcttcataa
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