Thalassolituus oleivorans MIL-1: TOL_0255
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Entry
TOL_0255 CDS
T02529
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tol
Thalassolituus oleivorans MIL-1
Pathway
tol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOL_0255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tol03019
]
TOL_0255
Enzymes [BR:
tol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TOL_0255
Messenger RNA biogenesis [BR:
tol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TOL_0255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Fanconi_C
CMS1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CCU70703
UniProt:
M5DMS3
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All DBs
Position
complement(266696..267946)
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AA seq
416 aa
AA seq
DB search
MSSFAALQLASPIITALTDLGYATPTPIQAQAIPTILAGKDVLAGAQTGTGKTAAFALPL
LTRLLEGQPAQSKHPHALILAPTRELADQVATSIQGYAAHTKLQTLAVYGGVSQRPQTDA
LTQGVDILVATPGRLLDLINQQALELSAVRWLILDEADRMLDLGFKDELVRLLKRLPKQR
QTLFFSATFPKSVKDLAYSMLNQPEEIAVAAANATLDSIEQVLYNMDTSKKRSALAWLIG
SGNWQQVLVFVRSKKQADDLASELIKDGIKCDSLHGDKSQGARARALDDFKNGKIRALIA
TDVAARGIDIIELPWVVNYELPFNAEDYVHRIGRTGRAGNSGKAISFVARNEENLLADIE
ALIKRPLPTQWLVGFEPNFDAPADSASHGRNQRKQRQKAKAKAKSQATYGIKKSRS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgtccagctttgctgcgttacagctcgctagcccaattattacggcattaaccgactta
ggttacgctacgccaacgcccatccaagcccaagcgattccaaccattctggccggtaaa
gacgttctggccggcgcgcaaacaggaacaggaaaaaccgctgctttcgcattacctcta
ttaactcgcctacttgaaggccaacctgcacagagtaaacaccctcacgcactgatattg
gcaccaacacgcgagcttgcagatcaagtggcgaccagtattcaaggctatgctgcccac
actaagttgcaaacattagcggtatacggcggcgtcagccaacgaccgcaaaccgacgcc
ctaactcagggcgttgatatcttagtggcaaccccagggcgcttactcgatctgatcaat
caacaggcgttagaactcagcgctgtccgttggctaattttggacgaagctgatcgtatg
ttggatcttggctttaaagacgaactcgtgcgtttgcttaaacgattacccaaacaacgc
caaaccctatttttctcggcaacctttcccaaatcggtcaaagatttagcctatagcatg
ctcaatcaaccggaagaaatcgcagtcgctgccgccaacgctacccttgatagtatcgaa
caagttctctacaacatggacaccagcaagaaacgctcggcactagcttggctcatcggc
tcggggaattggcagcaagtcttggtatttgtacgttcgaagaaacaagccgatgatctg
gctagcgaactgataaaagacggtatcaaatgcgatagccttcatggtgacaagagccaa
ggcgcacgcgcacgcgctctcgatgattttaagaacggtaagatacgcgctttgatagcc
accgatgttgcggcccgcggtatcgatatcattgaattgccttgggtcgttaactacgag
ctgccatttaacgccgaagactatgtgcatcggattggccgaacaggccgagccggtaac
agcggcaaagccattagctttgttgcgcgtaacgaagagaatttattggcggatatcgag
gctctaattaagcgtccccttccgacccagtggttagtcggcttcgaacctaacttcgac
gcccctgccgatagcgccagtcatggccgtaaccaacgcaaacaacgacaaaaagccaag
gcgaaagcaaaatctcaggcgacctatgggataaaaaaatctcgctcctaa
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