Thalassolituus oleivorans MIL-1: TOL_0338
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Entry
TOL_0338 CDS
T02529
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tol
Thalassolituus oleivorans MIL-1
Pathway
tol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOL_0338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tol03019
]
TOL_0338
03400 DNA repair and recombination proteins [BR:
tol03400
]
TOL_0338
Enzymes [BR:
tol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TOL_0338
Messenger RNA biogenesis [BR:
tol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TOL_0338
DNA repair and recombination proteins [BR:
tol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TOL_0338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
IQCJ-SCHIP1
Motif
Other DBs
NCBI-ProteinID:
CCU70781
UniProt:
M5DN15
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All DBs
Position
362242..364230
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AA seq
662 aa
AA seq
DB search
MTTHSQPTWLSALQNTFGFNSLREGQQPVVEAILAGRSAAAIFPTGSGKSLCYQLPALLL
PHLTLIVSPLLALMQDQVSFLRSKGVAAASLDSTLSREELQSVQQGVREGAIKILFISVE
RLKNERFREFIRHVAISLLVVDEAHCISEWGHNFRPDYLKLPEWRRQFNIPQSLLLTATA
TEKVVHDMRRHFEIAPSDVVSTGFYRKNLRLLVQPTAIEARIDKCAEWLNHRIKKGEAFG
SVIYVTQQNTADEVAQALKQRISVPVEAYHAGMQSENRQAIQQRFMTGTTPCIVATIAFG
MGIDKSNIRQVLHYDLPKSIENYSQEIGRAGRDGRAADCVLLADLSGLTVLENYTYGDTP
TLAAITRLLDTIQQDTVGINHEGQGRWETMMLPLSNQTDIRPLPLKTLLVHLEMAGYLTP
LFSYYAEYRFRLESESSLLAHFDAERQQFLQTIFQCSKKGRTWYSLDVPALEQAAGPDAR
LRAVRALEYCFENDWLTLEIKQMTEVYQVQAWPHAEQSVIAEKLYRTFLEHQESDIQRLH
NMIAVFQSQQCLSRQLAVYFNDHSMKQDCGHCSVCMGRWQAWPRPVKHAQQYDVAQVVTY
LSQFEQAYQTMFKLPSEAEAKTRFLCGMTSPWLTRLKARGIANYGCLESAPYATVLAIAK
EL
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcattctcagccgacttggctatccgctttacagaatacctttggttttaat
tcgctccgagaggggcagcaaccggttgttgaagctatattggcggggcgctctgccgca
gcaatttttcccacaggttcgggaaaatcattgtgctatcaattgcctgcattattgtta
ccacatttaactttgattgtttcgccactactggccttgatgcaagaccaagtgagcttt
ttgcgaagcaaaggcgttgccgcagcgagcttggattccacattatcgcgagaagaattg
caaagtgtgcagcaaggcgtgcgcgaaggtgcgattaaaattctatttatttccgtcgaa
cgtcttaaaaatgaacgttttcgcgaatttattcgtcacgtggcgatatctttgctggtg
gttgacgaggcacattgtatttctgaatggggtcacaatttccgccctgattatttaaag
ctaccagagtggcgtcgtcagtttaatattccgcagtcgttattacttaccgccacagct
acggaaaaagtagtgcacgatatgcgccggcattttgaaatcgcacctagcgatgtcgta
agtactggtttttatcgtaaaaatttacgcttattagtacaacccacggccattgaagct
cgaattgataaatgtgcagagtggctaaatcaccgtataaaaaaaggcgaagcattcggc
agtgttatttatgttacccagcaaaatacggcggatgaagtagcgcaagcattaaaacag
cgcatatctgttcctgttgaggcttatcatgcgggcatgcaaagcgaaaatcgtcaggcg
attcaacaacgttttatgacaggaacgacgccttgcattgttgctacgattgccttcggt
atgggcattgataaaagtaatattcgccaagtgctgcattacgatttgccgaaatcaatt
gagaattacagtcaagaaattggccgagctgggcgtgatggccgcgccgctgattgtgtg
ttgctcgccgatttatcgggtctaacggtgcttgaaaactacacctacggtgatacgccc
accttagcggcgatcacgcgcctactcgatactattcagcaggataccgtgggtattaat
catgagggccaagggcggtgggaaaccatgatgctgcctttatcgaatcaaacagatatc
cgccctctgccgttaaagactctgttagtgcatttagaaatggcgggctatttaacgccg
ttatttagttactacgccgaatatagatttcgtttagaaagtgagagcagtctactagcg
cattttgatgcggagcggcagcagtttttacagactatttttcaatgcagtaaaaaaggt
cgtacttggtacagtttggacgtgcctgcactagagcaagccgctgggcctgatgcacgt
ttgcgtgcagtgcgagcactcgaatattgcttcgaaaatgattggctgacactcgaaatt
aaacaaatgaccgaagtgtaccaagtgcaagcttggcctcatgcagagcagtcagtaatt
gcagaaaaactctatcgtacttttttggagcatcaggaaagcgatattcagcgcctgcat
aatatgattgcggtatttcaatcccagcaatgtctcagtcgccaactggctgtatatttt
aatgaccacagcatgaaacaggattgcggtcattgctctgtgtgtatggggcgttggcag
gcctggccgcgaccagtaaagcatgctcagcaatatgatgtagcgcaagtagtcacttat
ctatcgcaatttgagcaagcctatcaaacaatgtttaagctaccttcggaagcggaagct
aagacacgttttttgtgcggcatgacgagcccttggttaacacgattaaaagcgcgtgga
atagcgaactatggttgcctcgaaagtgcgccttatgcaacagtattggccatcgccaag
gaactctag
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