KEGG   Thalassolituus oleivorans MIL-1: TOL_0362
Entry
TOL_0362          CDS       T02529                                 
Name
(GenBank) predicted metal-dependent RNase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tol  Thalassolituus oleivorans MIL-1
Pathway
tol03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tol00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TOL_0362
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tol03019]
    TOL_0362
Messenger RNA biogenesis [BR:tol03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TOL_0362
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1 Sigma70_r1_1
Other DBs
NCBI-ProteinID: CCU70804
UniProt: M5DZ56
LinkDB
Position
387483..388865
AA seq 460 aa
MTPSASDLVFLPLGGTGEIGMNMNLYGHDGSWLMVDCGVTFPKPGRISADGTRHHSGEPD
TQMPDPEFIVARKDRLAGLVITHAHEDHVGAVPYLWHKLRCPIYCTRFTAEVLKKKLAEH
GLLHQVKIIVPETGERVHIGPFDVQFLALTHSIPDPNCLMIRTPVGNVFHTGDWKLDPDP
VVGHGYKKETFTQLAEEGVVAMVCDSTNATTSGHSASEGDLYDGLRHYIESAKGRVVVTC
FGSNIARLLTLSHVADDTGRYMGLYGRSMINMHQCAKRAGVWPFSAGSVDTGHLGYLPRH
EVLAVATGSQGEPHTALRRLAAGTHPDFELEAGDRVIFSARAIPGNEDAINGIIEQLKSM
GVDVITADEAELPIHASGHPAQEELETLYQWVQPEISIPVHGEEVHMKAHAGLAKGCGVP
QTMTGRNGDIFLLRPVPGIQRQKVRTGRLGWEKGKLVNVV
NT seq 1383 nt   +upstreamnt  +downstreamnt
atgaccccttcagcatctgatcttgtattcctgcctcttggcggcaccggcgagatcggg
atgaatatgaacctttacggccacgatggtagttggctgatggtcgattgcggtgtcact
tttcctaagccggggcgtatcagcgccgatggtacacgtcatcactccggtgaacccgat
acgcaaatgcctgatcctgaatttattgtagcccgcaaagatcggctcgctggcttagtg
attactcacgcgcacgaagatcacgtcggggcggtgccgtatttgtggcacaagttacgg
tgcccaatttattgcacgcgctttaccgccgaagtactgaaaaagaaactcgcggaacat
ggtttgctgcatcaggtaaaaatcatcgtaccggaaaccggcgagcgcgttcatatcggc
ccctttgatgttcagtttttagcactgacacattcgattcctgatcctaattgtttaatg
attcgcacccctgtgggcaatgtatttcataccggcgattggaagttagatcctgatccg
gtggtgggtcatggctataaaaaagaaaccttcacgcaattggcggaagagggcgtggtg
gccatggtgtgtgactctactaatgccaccacttcgggtcattccgcgtctgagggcgat
ctctatgatggcctacgccattatatcgagagtgccaagggacgcgtggtggtcacttgt
ttcggtagcaacatcgcccggcttttaactttatcgcacgtggctgacgatactgggcgt
tatatggggttgtacggtcgttcgatgattaatatgcatcagtgcgctaagcgcgccggt
gtttggccgttcagtgccggctctgttgatactgggcatttaggttatttaccacgtcac
gaagtgcttgccgtggcaactggcagtcagggcgaacctcatacggccttgcgtcgattg
gcggcgggtacgcatcctgattttgaattagaagccggtgatcgggtgatcttcagtgct
cgtgctattcccggcaatgaagacgccatcaacggcattatcgagcagctgaaaagtatg
ggcgttgacgtgattaccgccgacgaagctgagctacccattcatgcctctgggcaccct
gcgcaagaagaactcgaaaccttataccaatgggtgcaaccagaaatctcgattccagta
catggcgaagaggtgcacatgaaagcgcacgcgggtttagcgaaaggctgcggcgtgccg
caaaccatgacgggccgtaatggtgatatctttctgctacgtcctgttccgggtattcaa
cggcaaaaagtcagaacaggacgtttaggttgggagaagggtaagttagttaacgtggtt
tag

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