Thalassolituus oleivorans MIL-1: TOL_1009
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Entry
TOL_1009 CDS
T02529
Name
(GenBank) Exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tol
Thalassolituus oleivorans MIL-1
Brite
KEGG Orthology (KO) [BR:
tol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tol03016
]
TOL_1009
Enzymes [BR:
tol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TOL_1009
Transfer RNA biogenesis [BR:
tol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TOL_1009
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GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Pep_deformylase
CSD
Motif
Other DBs
NCBI-ProteinID:
CCU71445
UniProt:
M5DNC2
LinkDB
All DBs
Position
complement(1072354..1074285)
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AA seq
643 aa
AA seq
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MLDKNALSQLKSLKQEIQQSTPRFEGTVRATAGRFGFVNTEDGQSFFLSPEEMEKVLPGD
VVAFRVEPAGEGKEQAIVESLISTVQNEFLGRYVVRGKGHFVEADHPTLNRWIFVPPAKR
LQAKDGDLVKAHISQHPFPKGKAQADLDAVIGNDQTPHIERLFVQQKFGLSDAISDAAQA
QVDALCAQGVDTIANERSDLTHLPFVTIDSAGTRDIDDALYAEAQSSGWTLWIAIADPAA
LIEPGTPLDELAKTRATSAYFPDQVLPMLPPALSEQLCSLQAGELRLAMVVELRLSQDGD
VRQTTLHNAIIKSRAKLTYNQVSHLIAGECDEIAAELQGPVLHLSDCAKALAANRLRNCL
VMEDRPDFKLLVDEDGHVTDIVRIERNDAHRLVEECMLVCNRSVALWLKERNAGMFIEHA
GVRSERIGEVAALLRENLALEAKPKFDNLEEYVQLMQQAAKAECELPLRAIIGRQQERSR
FGLEGKPHMGLGFPCYTTFTSPLRKYNDLMIHRTVRALLNGENIEQASQELLDAVQQAQT
SARIAANQTEQWMKLVWLNAKDKDAVYNATIVHMNSSSITVRLNDNGIEGTIDRRKVKGD
WTFDSKTFTHRNAEQCFMLGQALNVRINEVRPYNRQVTFVIVE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcttgataaaaacgcactatcccagctgaagtctctgaagcaggaaatccaacaaagc
acccctcgattcgaaggtactgttcgcgccactgcgggacgtttcggttttgtgaatacc
gaggatggtcaaagtttctttttatcccccgaagagatggaaaaagtattaccgggagat
gttgtcgcatttcgcgtagaacccgcaggcgaaggtaaagaacaagccatcgttgaaagc
ttaatcagcacagttcaaaacgaatttttaggacgctatgtcgttcgcggtaaaggacat
tttgtcgaagctgatcatccaacactaaatcgttggatatttgtaccacccgccaaacgc
ttacaagcaaaagacggcgatcttgttaaagcacatatcagccaacatccatttccgaaa
ggtaaagcccaagccgatttagatgcggttattggtaacgatcaaacaccgcatatcgaa
cgcttatttgtgcagcagaagtttggcctcagtgatgccatctccgatgcagcccaagca
caagtagacgcgttatgcgcccaaggcgtggatacgattgccaatgagcgcagcgattta
acccacctaccgtttgtgaccatcgactcagcaggaacgcgcgacatagatgatgccttg
tacgctgaagcgcaaagcagcggctggacattatggattgctatcgccgatccagcagca
cttatcgagccgggaacgccacttgatgaattagcaaaaacacgtgcaacatcggcgtac
tttcctgatcaagtactgccaatgctgccacccgcattgtcagagcaattgtgctcgttg
caagctggcgagctacgcttggccatggtggttgaattacgcttgagccaagatggcgat
gtgcgtcaaacaaccttacacaacgcgattatcaaaagccgagcaaagctgacgtacaac
caagttagccatttgattgctggcgaatgtgatgagattgccgctgaactgcaaggcccg
gtgttacatctatccgactgcgccaaagcactggcagctaaccgcctgcgcaactgcttg
gtgatggaagatcgcccagactttaagctcctggtcgatgaagatggccatgtaaccgat
atcgttcgtattgagcgcaacgatgcacatcgtttagtcgaagaatgtatgttggtttgc
aatcgctcggtcgccttgtggttgaaagaacgcaacgctggtatgttcatagaacacgca
ggcgttcgtagcgaacgtatcggtgaagtcgccgcgctattacgcgaaaatctagcgctt
gaagccaagccgaaattcgacaacctcgaagaatacgtacaactaatgcaacaagcggcc
aaggctgaatgcgaactaccgttacgcgcgattatcggtcgccaacaagaacgcagccgc
tttggccttgaaggcaagccacacatgggcttgggcttcccttgctataccaccttcacc
tcaccactgcgcaaatacaacgacctgatgattcatcggacagtacgtgctttgcttaat
ggcgaaaatatcgagcaagcatctcaagaattactcgatgccgttcaacaagcacagact
tctgcacggatagcagcaaatcaaaccgaacaatggatgaaacttgtttggttaaatgcg
aaagataaagatgcggtttataacgcgacaattgtgcatatgaatagcagctcaataacg
gtgcgtttaaatgacaatggtatcgaaggcactattgatcgccgtaaagttaaaggtgat
tggacatttgatagcaaaacatttactcatcgcaatgcagagcaatgctttatgcttgga
caagcactcaatgtgcgtattaatgaggttcgcccttataatcgccaagtaacgttcgta
atagtggaataa
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