Thalassolituus oleivorans MIL-1: TOL_1025
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Entry
TOL_1025 CDS
T02529
Name
(GenBank) recJ gene product
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tol
Thalassolituus oleivorans MIL-1
Pathway
tol03410
Base excision repair
tol03430
Mismatch repair
tol03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TOL_1025
03430 Mismatch repair
TOL_1025
03440 Homologous recombination
TOL_1025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tol03400
]
TOL_1025
DNA repair and recombination proteins [BR:
tol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TOL_1025
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TOL_1025
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TOL_1025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
DUF4774
Motif
Other DBs
NCBI-ProteinID:
CCU71459
UniProt:
M5E1E5
LinkDB
All DBs
Position
1086332..1088038
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AA seq
568 aa
AA seq
DB search
MPRIQSREIPIALGLQSLPPVLQRVYAARGVLAVDELALQLKGLLPYREMKGIDQAVMAL
IPVVTQGKRLLVVGDFDVDGATSTAVALRALRLMGAQNVDYLVPNRFDFGYGLSPELVAV
AVTMKPDLIMTVDNGIASIDGVAAANAAGIAVVVTDHHLAADQLPDALAIVNPNQPGCEF
ASKAACGCTVVFYVMLALRAALDKSGWFSQREAPNMAQLLDLVALASVADVVPLDRNNRI
LVEQGLRRIRAGQGHVGIQALLTVAGREPARIVASDFGFAIGPRLNAAGRLDDMSLGIEC
LLTDDMNRALDIATQLDAFNRDRRSIEQGMQQEALALLAKFEADDHNPVGVCLFQPDWHQ
GVIGILASRIKDKLFRPVIAFAADDNGVLKGSARSIPGLHIRDVIDEVDKRHPGLIKKFG
GHAMAAGMTLNDGAFDAFSRAFDWVCQAHLSSEQLHQTIDSDGNLSIAEFSLELAEQLRW
GGPWGQNFPEPVFDGHFRLVQQRIVGERHLKMVLQPEGSDLALDAIWFNIDPQQWPDQQR
DRVHCAFQLDVNEFRGRQSLQLLIRHLE
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtattcaatcgcgagaaattccaattgcactgggcttgcaatcattgcctccg
gtgttgcaacgtgtctacgccgcgcggggtgttttggccgtcgacgagttagcgttgcaa
ttaaaaggcttattgccataccgcgaaatgaaaggcatagaccaagcggttatggcatta
attccggtggtaacccaaggaaagcgtttgctggtggtaggtgattttgacgtggacggt
gcgacaagtaccgcggttgctttgcgcgctctgcgtttaatgggagcacaaaacgtcgat
tatttagtgcctaatcgttttgatttcggttatggcttatcacccgaattagtcgctgtc
gcagtcactatgaaacccgatttaattatgacggtggataatggtatcgcgtctattgat
ggtgttgctgccgcgaatgcggcaggcattgctgtggtggttacagatcaccatttagcc
gctgatcaacttcctgatgcactcgctattgttaatcctaatcagccagggtgtgagttt
gcgagtaaagcagcatgcggttgtactgtggtgttttatgtcatgctcgcgttacgagca
gcgctggataaaagtggttggtttagccaacgagaagcaccgaatatggcgcaattattg
gatttagtggcactcgcaagtgtcgcagatgtggtaccgcttgatcgtaataatcgaatt
ctggttgaacaaggtttacggcgtattcgtgcagggcaagggcacgttggtattcaggct
ttattgacggtggctgggcgtgagccagcacggattgtagcgtcggattttggctttgcg
attggccctcgtctcaatgccgcaggacggttggatgatatgtctttgggtatcgaatgc
ttattaaccgacgatatgaatcgggcgttggatattgcgactcagcttgatgcgtttaat
cgtgatcgtcgttcgattgagcagggtatgcaacaagaagcgctagccttattggccaag
tttgaggcagatgatcacaaccccgtgggggtatgtttgtttcaacccgattggcatcaa
ggtgtgattggtattttagcctcgcgtattaaagataaattatttcgtccagtgattgct
tttgcagcggatgataatggcgtattgaaaggttccgcacgttcaattccggggttacat
attcgggatgtgattgacgaagtggataagcgtcacccaggtttaattaagaaatttggt
ggccatgcgatggccgccggtatgactttgaacgatggtgcttttgatgcctttagtcgt
gcatttgattgggtgtgccaagcgcatttatcgtcagagcaattgcatcaaaccattgat
agcgatggcaatttgtcgatagctgaatttagtttagagctagctgaacagttacgctgg
ggtggcccttgggggcagaacttccctgagccagtgtttgatggtcattttcgcttagta
cagcagcggatcgtgggcgaacgtcatttaaagatggtactgcaaccagagggatctgat
ctcgccttggatgcaatatggtttaatatcgatcctcagcagtggcccgatcaacagcga
gatcgagtgcattgcgcatttcaattggatgttaatgagtttcgcgggcgtcagtcattg
cagttgttgattcgtcatttggaataa
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