Thalassolituus oleivorans MIL-1: TOL_3565
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Entry
TOL_3565 CDS
T02529
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tol
Thalassolituus oleivorans MIL-1
Pathway
tol03420
Nucleotide excision repair
tol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TOL_3565
03430 Mismatch repair
TOL_3565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tol03400
]
TOL_3565
Enzymes [BR:
tol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TOL_3565
DNA repair and recombination proteins [BR:
tol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TOL_3565
MMR (mismatch excision repair)
Other MMR factors
TOL_3565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
AAA_22
AAA_11
Cas_Cas2CT1978
Motif
Other DBs
NCBI-ProteinID:
CCU73950
UniProt:
M5DWK4
LinkDB
All DBs
Position
complement(3740613..3742823)
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AA seq
736 aa
AA seq
DB search
MDISLLLDSLNDGQRNAVAASSPHQLVLAGAGSGKTRVLVHRIAWLLQVENVSPFAVMAV
TFTNKAAKEMRGRLEHLLNIPSNGLWVGTFHGLAHRLLKQHWQEAKLPQHFQILDSDDQL
RVIKRLMKAHNIDDTRYPPKQIQWYINGQKDEGRRAAHVMPSGDPFGRQLHDFYYIYEEN
CQQNGLVDFGEILLRAHELWLHNPDLLAHYQQRFRYILVDEFQDTNNIQYAWIRLLAGNK
VSVMAVGDDDQSIYGWRGANVGNIRDFQKDFPGAELIKLEQNYRSTANILAAANAVIANN
QGRLGKELRTDDEDGEKIVLYSAFNEQDEARYIADLVDEWAKAGRARTDMAILYRSNAQS
RTLEEALLRAGIPYRIYGGQRFYERLEIKNALSYLRLMLTRDDDAAMERVINVPARAIGE
KSVDILRSFARDHGCSLWQAAAGAIKHGLLPKRASAAVQSFLDLIDELSVGMNDLPLHEL
MDQVITNSGLIEHHRKEKGEKGQARIDNLEELINAAKQFEPSAAEAEDPQADDLSPIAVF
LDSAALDAGDAQADEYDDAVQLMTLHSAKGLEFPQVVLAGVEEGLFPHKMSMDEADGLEE
ERRLAYVGITRAMEKLIITHAESRRLYGQENFSTPSRFIREIPSDLIQEVRLKNSVSRPL
TARDRNNYGGSSYQSEPAFVQTQYPFSLGQRVYHEMFGEGMVLQFEGQGPGLRVQVNFDD
TGSKWLVASFAKLEAL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggatatttcattgcttttagattctttgaacgacggccaacgcaacgctgtggctgcc
agttctccgcaccaattggtgcttgctggtgccggttcgggtaaaactcgagtactggtg
caccgtattgcttggttgttacaggttgagaacgtgtcaccgtttgccgtgatggcggtg
acctttaccaataaagccgctaaagaaatgcgtggccggttggagcacttactcaacatt
ccttcaaatggattgtgggtgggcacatttcatggcttagcgcaccgcttgctaaaacag
cattggcaagaagccaagctgccacagcattttcaaattttggatagcgatgatcagctg
cgtgtgattaagcgcttgatgaaagcacataacattgacgatacacgttatccgccgaaa
caaattcagtggtatatcaacggccaaaaagacgaaggtcgacgcgccgcacatgttatg
ccatcaggtgatcccttcgggcgacagttgcacgacttttattatatttacgaagaaaat
tgccaacaaaatggcttggtcgatttcggcgaaatattattgcgtgcgcacgaattatgg
ctgcataaccctgacctattagctcactatcaacagcgtttccgctatattttggtggac
gagtttcaagataccaacaatatccaatacgcatggatacgcttattagcaggtaataaa
gtctcggtgatggccgttggtgatgatgatcaatctatctacggttggcgtggtgctaat
gtcggtaatattcgtgatttccaaaaagattttccgggtgcggaattaattaagcttgag
caaaattatcgttctaccgcgaatatcttagcggccgccaatgcggtgattgcgaataac
caaggtcgtcttggtaaagagttgcgtaccgatgatgaagatggcgaaaaaatagttctc
tacagcgccttcaatgaacaagatgaagcgcgttatatcgctgatttagtcgacgaatgg
gctaaagccggtcgtgcgcgtactgacatggcgattttatatcgctctaatgcgcagtcg
cggacactcgaggaagcgctattgcgtgcgggcattccttaccgtatttatggtggccag
cgtttctatgagcgcctagaaattaagaacgcgttatcgtatttgcgtttaatgttaacg
cgcgatgatgatgcggcaatggagcgtgtcattaacgtacctgcgcgtgccatcggcgaa
aagagcgttgatattttgcgcagctttgcccgcgatcatggctgctcgttatggcaggct
gcagccggtgcgattaaacatggtttattgcctaagcgtgcgtcggcagcggtgcaaagt
ttcctcgatcttatcgacgaactcagtgtcgggatgaatgacttgcctctgcatgaattg
atggatcaagttattactaatagcggattaattgagcatcatcgcaaagaaaaaggcgaa
aaaggccaagcgcgcattgataaccttgaagagttaattaatgcggctaaacaatttgag
ccatccgctgctgaggctgaagatccgcaagccgatgatctatcccctattgctgtgttt
cttgatagcgcggcactggatgccggtgatgcacaagcggatgagtacgatgatgcggtg
caattgatgacgctgcactcagccaaaggcttggaatttccgcaggtggtattagccggt
gtggaagaaggtttattcccgcataagatgtcgatggatgaagccgatggccttgaagaa
gagcgccgtcttgcttacgtcggtataacccgcgccatggaaaagctgattattactcat
gctgaaagtcgtcgtttatatggccaagagaacttcagcacgccatcacgttttattcgt
gaaataccttcggatttgattcaagaagtgcgcttaaaaaatagcgtaagtcgtccgtta
acggcccgagaccgcaataactatggtggctcaagttatcagagtgagcctgcgttcgtg
cagacacaatatccatttagtcttggtcagcgcgtctatcatgagatgtttggtgagggc
atggtattgcagtttgaagggcaggggccgggattgcgtgtgcaagtgaattttgacgac
accggcagtaaatggctggtcgcgagttttgctaaactggaagctttataa
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