KEGG   Tateyamaria omphalii: BWR18_17405
Entry
BWR18_17405       CDS       T04652                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
tom  Tateyamaria omphalii
Pathway
tom03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tom00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BWR18_17405
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tom03019]
    BWR18_17405
   03016 Transfer RNA biogenesis [BR:tom03016]
    BWR18_17405
Enzymes [BR:tom01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BWR18_17405
Messenger RNA biogenesis [BR:tom03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BWR18_17405
Transfer RNA biogenesis [BR:tom03016]
 Prokaryotic type
  tRNA degradation factors
   BWR18_17405
SSDB
Motif
Pfam: RNB CSD2 S1
Other DBs
NCBI-ProteinID: APX13260
UniProt: A0A1P8MYT9
LinkDB
Position
3475496..3477751
AA seq 751 aa
MSRIPSKPEILDWISANPTLTAKRDIAKAFGIKGAARIDLKRLLKELEAEGHLEKRKKTY
QDPDRLPPVSVLQVTGPDADGDLFAQPMEWQGEGVEPKILVLPRASDPALGQGDRILARL
TLVKDTDHNYEARLIRRIGTNPRRILGVFRVSAEGGRIVPIDKGSDKEWQVPAGATHGAK
DGELVEAEQAGPRGRIGLQRARVVNRLGDPSAPKAVSLIAIHEHGIPDAFPDAVITEADA
QKPKGLKGREDLRDMPLVTIDPSDARDHDDACYAHADDDPKNAGGHIIWVAIADVAAYVT
PGSALDREAKKRGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACIAVRMQIDAQGEKIG
HSFHRGLMRSPASLHYEEVQAAMDGHPNDRIEPLLEPVMRPLYAAYAALVEARKKRQPLE
LDLPERQIVLDEVGTVHSVAFKDRLDAHRLIEEFMVLANVAAAETLIAKKSPLLFRVHEE
PSPDKLESLRETAQAAGLNLAKGQVLKTAHLNRLLAQAAGTEDAELINISTLRSMTQAYY
SPQNFGHFGLALRSYAHFTSPIRRYADLIVHRALVSAHGWGNDGLTPEDIEVLEKTGTHI
SDTERRSMVAERDTTDRYLAAYLSERVGDEMEGRVAGIAKFGIFVKLDDSGADGLVPMRS
IGAEYFHFDREANTLMGSDTGMIISLGQRATVRLAEAVPVTGGIALELLALDGQSLPRGR
QSPAGRSPRRKPAKAKRRSDKVQRKVSRKRR
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgagccgtattccaagcaagcccgagatcctcgactggatttccgccaatcccaccctc
actgcgaaacgcgacatcgccaaggcctttggcataaagggtgccgcgcggatcgacctc
aagcgcctgctgaaagagcttgaggccgaggggcatctggaaaagcgcaagaagacctat
caggaccccgaccgcctaccgcccgtcagcgtgttgcaagtgaccggcccggatgccgac
ggcgacctctttgcccagccgatggagtggcagggcgaaggggtcgaacccaagatactg
gtcctgccccgcgcctctgaccctgccttgggccagggcgaccgcattctggcgcgcctc
acgctggtcaaggacaccgaccacaattacgaggcgcggctgatccgccgcatcggcacc
aacccgcgccggatcctcggtgtctttcgcgtcagtgccgaaggcgggcggatcgtgccc
atcgacaagggcagcgacaaggaatggcaggttccggcgggcgccacccacggcgccaag
gatggcgagttggtcgaggccgaacaggcgggcccgcgtgggcgcatcgggctgcaacgc
gcccgtgtcgtcaaccggctgggcgatccgtctgcgcccaaggccgtgtcgctgatcgca
atccacgaacacggcatccccgacgcctttcccgatgccgtgatcaccgaagcggacgca
cagaaacccaaagggttgaagggacgcgaagatttgcgggacatgccgcttgtcaccatc
gacccatctgatgcgcgggaccatgacgatgcgtgctatgcccacgccgatgacgacccg
aagaacgcgggcggacacatcatttgggtcgcgattgccgatgtcgcggcttacgtcacg
cctggctctgcccttgaccgcgaggcgaagaaacgcggcaactcgacctatttcccggac
cgggtggtgccgatgcttccggaccgtctgtcgggcgacctgtgttcgctgcacgagggc
gtgccgcgcgcttgtatcgccgtgcggatgcagatcgacgcgcagggcgaaaagatcggg
cacagctttcaccgcggcctgatgcggtcaccggcctcgctgcactacgaagaggtgcag
gcagccatggacggccacccaaatgaccgcattgagcctttgttagagcctgttatgcgc
ccgctctacgccgcctatgccgccttggtcgaggcgcgcaagaaacggcaaccgctggaa
ctggacctgcccgaacggcagatcgttctggatgaggttggcaccgttcactccgtcgcc
ttcaaggaccggctcgatgcgcaccggctgatcgaagaattcatggtgctggccaatgtc
gctgccgccgagactttgattgccaaaaaatcgccgcttctgttccgcgtgcacgaggaa
ccgtcgcccgacaagctggaaagcctgcgggaaacggcgcaggccgccggtctgaacctc
gccaaaggacaggtgctgaaaaccgcgcatctcaaccgcttgctggcgcaggcggcaggc
actgaggatgccgagttgatcaacatctcgaccctgcggtcgatgacgcaggcctattac
agcccgcagaatttcggtcacttcggcctcgcgctgcgcagttacgcgcacttcacctcg
cccatccggcgctatgccgatctgatcgtgcaccgtgcgctggtgtcggcgcatgggtgg
ggcaatgacggcctgacgcccgaggacatcgaagtgctcgagaaaaccggcacgcatatc
tcggacaccgaacgccggtcgatggtggccgagcgggacacgacggatcgttacctcgcg
gcctatctgagcgaacgtgtgggggacgagatggaggggcgcgtggcgggcatcgccaag
ttcggcatcttcgtaaagctggatgacagtggggccgacggcctcgtgcccatgcgatcc
atcggcgccgagtatttccattttgaccgcgaggcaaacacgctgatggggtccgatacg
ggcatgatcatcagccttgggcagcgtgccaccgttcggctggccgaggctgtgccggtc
acgggtggcatcgcgctggaactactcgcgcttgacggacaatccttgccgcgcgggcga
caaagtccggcagggcgcagcccgcgccgcaaacccgccaaggcgaaacgccggtccgac
aaggtccagcgcaaggtcagccgcaagcggcgctaa

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