Thermococcus onnurineus: TON_0029
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Entry
TON_0029 CDS
T00789
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
ton
Thermococcus onnurineus
Pathway
ton03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ton00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TON_0029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ton03019
]
TON_0029
Messenger RNA biogenesis [BR:
ton03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TON_0029
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TON_0029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ACJ15513
UniProt:
B6YSI1
LinkDB
All DBs
Position
26879..27649
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AA seq
256 aa
AA seq
DB search
MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPY
IPEVGDNVIGKIVDVKFSNWTVDIGAPYQANLRVQDAVEERIDVLKTDLRKIFDIGDIIY
AKIKAYNEINQIDLTTKGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKKEELEKLAIEAILKVDRESHTQGLTDRVKELLMSRLQELKEQGVIE
EIPQIEEPTAGEGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgaggcggatttttgtaaaaaatagggaactggttgtccctgggactttactcgcccag
gggccgtttaagagtggaagaggaaccttcagggaagggaacaggatttactcgacagtt
gtagggctcgtagagatcagaggagatgccataagggttatcccccttgagggcccctac
ataccagaggttggcgacaacgtcatagggaagatagtggacgtcaagttctccaactgg
acggttgacatcggcgcaccttatcaggcgaacctgcgcgttcaggatgccgttgaggag
cgcattgacgtcctaaagactgacttgaggaagatatttgacataggcgatataatctac
gccaagataaaagcctacaacgagatcaaccagatagacttgaccaccaagggaatgcca
ttcaagggtggaccgctcagggggggtcagatagtaaagataacgccctccaaggtgccc
agacttataggcaagggcggttcgatgataaacctcatcaagaaactaaccggtacgagg
ataattgttggccagaatggatgggtctgggtcagcggaaagaaggaggagcttgagaaa
ctcgctatcgaagctattctcaaagttgacagggagagtcacacacagggactcacagac
agggtgaaggagctccttatgagcaggctccaggagctcaaggagcagggagttattgag
gagataccccagattgaagagccaaccgctggagaaggtgaaggagaatga
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