Tetragenococcus osmophilus: C7K38_00295
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Entry
C7K38_00295 CDS
T05711
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
too
Tetragenococcus osmophilus
Pathway
too03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
too00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7K38_00295 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
too03019
]
C7K38_00295 (rnr)
03016 Transfer RNA biogenesis [BR:
too03016
]
C7K38_00295 (rnr)
Enzymes [BR:
too01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C7K38_00295 (rnr)
Messenger RNA biogenesis [BR:
too03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7K38_00295 (rnr)
Transfer RNA biogenesis [BR:
too03016
]
Prokaryotic type
tRNA degradation factors
C7K38_00295 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1_RRP5
OB_HELZ2
HVO_A0114
Motif
Other DBs
NCBI-ProteinID:
AYW46943
UniProt:
A0ABN5QS64
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All DBs
Position
complement(53768..56101)
Genome browser
AA seq
777 aa
AA seq
DB search
MKETIKTKVLDFMENSSKKSFSMEEIAQHLGLEKSKDFKTLVQTVATMEREQLVDFNKKG
KVKLPAKQNLVEGSFHANERGFGFVTIDSEEDDVYVGKENTNYALDGDLVAIEIIKADDP
AEDRGAEGKVVEIRQRSITQVVGEFQLFSEEEIADTDLYGVITPKAKKLSGFKVLVSAVG
VRPVDGNIVVAEITHYPEKGYSDTLEGIVKNIIGHKDEPGMDILSVLAANHVPTEFSDKA
LEQANQVPDTIDPNNYPERKNRQEQTIVTIDGEGAKDLDDAVSVQKLENGHFFLAVHIAD
VSYYVTEDSPLDKEAFERGTSVYLTDRVVPMIPQRLSNGICSLNPQVPRLAMSCEMEVDE
EGTVVSYDIFPSVIQTNARMTYTAINEILEDENSETMAQYKDLVPMFQSMKELHEILEAM
RTRRGALTFEDNEAQVVVDESGHPLDIVLNQRGVGERMIESFMLCANETIAKHYDQLNLP
FIYRIHEAPDEEKLQQFFDFAATLGILVKNKKGKVSPKELQAVVENAAEKPESMVINMML
LRSMQQAHYSEENVGHYGLAAEYYTHFTSPIRRYPDLLVHRLIRSYWKDASKQQQGRWSK
KIPEIAQHSSDMERRAVDCERDVDSMKKAEYMQDHIDEEFEGVISSVVKFGFFVELPNTI
EGLIHVSDLKNDYFQFIESQLALVGEHTGQTYKIGQQVTVRVTKANPETREVDFELAGNS
QTSQPKAENGRNRKQRRKKQSEPASKQDNKGKKDKKKNKKKKKPFYKDAPKNKRNKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaacaataaaaacaaaagttttagattttatggaaaacagctctaaaaaaagt
ttttccatggaagaaattgcacaacatttagggcttgaaaaaagcaaggattttaaaact
ctagtacagacagtagcaacaatggaaagagaacaactcgttgattttaataaaaaaggg
aaagtaaaacttcctgctaagcaaaatttagtcgaaggaagtttccatgcgaatgaacga
ggatttggatttgtgaccattgattctgaagaagatgatgtatatgttggaaaagagaat
acgaactacgctttagacggtgacttagtagctattgagattataaaggcagatgatcct
gctgaagaccgaggcgcagaaggaaaagttgttgaaataagacaaagaagtattacccaa
gttgtgggtgaattccaactattttctgaagaagaaattgccgataccgatttatacggt
gttattaccccaaaagccaaaaaattatccggctttaaggttttggtttcggctgtaggt
gttcgaccggtagatggcaatattgtagtggctgaaattactcactatcctgaaaaaggt
tattcggatactttagaaggtatagtcaaaaacattattggtcataaagacgagccggga
atggatattttatcagtattggcggcaaatcatgttcctacagaattttcggacaaagct
cttgaacaagccaatcaagttcctgacaccattgaccccaataattatcccgagcgcaag
aatcgtcaagaacaaacgattgtaactattgatggagaaggcgctaaagatctagatgac
gcggtttcagttcaaaaactagaaaacggacacttctttttagccgtgcatatcgcagat
gtgtcttattatgtgacagaagatagtccgttggataaagaagctttcgaacgagggaca
agtgtgtatttaacagaccgtgtcgttcctatgatacctcaacgattatctaatggtatc
tgttcgttaaatccgcaagtgccaagacttgcaatgagttgtgaaatggaagttgatgaa
gaagggacagtcgtctcttatgatatttttccaagtgttattcaaacgaatgcgcgcatg
acttatacagccattaatgaaattttagaagatgagaattcagaaacgatggctcaatat
aaagatttggtcccaatgtttcaatcgatgaaagagctccatgaaattttagaagctatg
agaactagacgtggtgctttaacttttgaagataacgaagcacaagtagtggttgatgaa
agtggccatcctttagatattgttttaaaccaacgcggcgttggtgaacgcatgattgaa
tcttttatgctttgtgccaatgaaacaattgctaaacactatgatcaattaaatctccca
tttatttaccgtatccatgaagcaccggatgaagaaaagctgcagcagttttttgatttt
gcagctacgttggggattctggtgaaaaataaaaaaggaaaagttagtccaaaagagtta
caagcggtagtagaaaatgcagctgaaaagcctgaaagtatggttattaacatgatgctt
ttaaggagtatgcaacaagctcattactctgaagaaaacgttggtcattatggattagct
gctgagtattatacacatttcacttcaccaatccgtcgttacccggatttgttagtgcat
cgcttaatacgttcgtattggaaagatgcttcaaaacaacagcaagggcgttggtctaaa
aagattcccgaaatcgcacaacatagttcagatatggaacgtcgcgcagtagattgtgaa
cgtgatgttgattcaatgaaaaaagccgaatatatgcaagatcatatcgatgaagaattt
gaaggcgtgattagttcggttgttaagtttggattttttgttgaattaccaaatacaatt
gaaggtcttattcacgtaagtgatttgaaaaatgattatttccaatttattgaaagtcag
ttagctcttgttggcgaacataccggtcaaacatataaaattggccagcaggtgacagtg
cgagtaactaaagcaaatcctgaaacaagagaggtcgactttgaactagcaggcaattct
caaacgagccaacccaaagctgaaaatggacgaaatcgtaagcaacgtagaaaaaaacaa
tcagaacccgcatcgaaacaagataataaagggaaaaaagataaaaaaaagaataagaaa
aagaaaaaacctttttataaagacgcaccaaaaaataaaaggaataaaaaataa
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