Tetragenococcus osmophilus: C7K38_03620
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Entry
C7K38_03620 CDS
T05711
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
too
Tetragenococcus osmophilus
Pathway
too03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
too00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7K38_03620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
too03019
]
C7K38_03620
03009 Ribosome biogenesis [BR:
too03009
]
C7K38_03620
Enzymes [BR:
too01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C7K38_03620
Messenger RNA biogenesis [BR:
too03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C7K38_03620
Ribosome biogenesis [BR:
too03009
]
Prokaryotic type
rRNA helicases
C7K38_03620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Helicase_RecD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AYW47541
LinkDB
All DBs
Position
complement(748547..750070)
Genome browser
AA seq
507 aa
AA seq
DB search
MKFKELNLSQGLLDAVQKIGFEEATPIQEETIPLAMEGKDVIGQAQTGTGKTAAFGLPML
DKIDPKKRQIQGLVIAPTRELAIQTQEELFRLGREKKIQVQAVYGGADIGRQIRQLKDNP
HIVVGTPGRMLDHINRRTLKLATVETLVLDEADEMLNMGFLEDIEKIIAQVPEKRQTLLF
SATMPKEIKTIGVKFMKDPHHVRIKAKEMTADSIDQYYVKAKDYEKFDIMTRLFDVQLPE
LTLIFARTKRRVDEIANGLEARGYKAEGIHGDLSQQKRMTILRSFKKGQLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGVSVTFVTPNEMNYLHVIENLTKK
RMTPMRPPSDKEALEGQINQAVELIDEKMAENGLDKYSKDADELLKHYSAQDLAALLLKT
LAKDPAEVVPVKITPERPLPKGKSNKGRRKNDSHNRNNRNYKQDRRKNNNKDYHKKNNNQ
SSKSGSPKKSRRGNEKKQDFVIRNGQN
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttaaagaactaaatttgtcacagggcttattagacgctgtgcaaaaaattggc
tttgaagaagcaacgccaattcaagaagaaacgattccattagcaatggaaggaaaagat
gtcattggacaagcacaaacaggaactgggaaaacagctgcttttgggttgccaatgtta
gataagattgatcctaaaaaaagacaaattcaaggtttagttatcgctcctactcgggaa
ttagcgattcaaacccaagaagagttatttcgtttaggaagagaaaagaaaattcaagta
caagcagtatatggaggcgctgatattggccgacaaattcgtcaactaaaagacaatcca
catatcgtggttggtacgcctggacgtatgttggaccatattaatcgtcgaacattaaaa
cttgctacggttgaaacattggtattagatgaagcagacgaaatgttgaatatgggcttt
ttagaagatattgaaaaaatcattgcccaagttccagaaaaacgccaaacattgctcttt
tctgctactatgcctaaagaaatcaaaacaatcggcgttaagttcatgaaagatccgcac
catgtgcgtattaaggctaaagaaatgactgctgactctattgatcagtattatgtaaag
gcaaaagattatgaaaaatttgatattatgacacgtctttttgatgtgcaattgcctgaa
ttaacacttatttttgctcggacaaaacgtcgtgtggatgaaatagctaatggcttagaa
gcgcgtggctataaagctgaaggaattcatggagacctttctcaacaaaaacgtatgacg
atattgcgttctttcaaaaaaggacagttagatatcttagttgcaacggacgtagctgca
agaggtttggatatttctggtgtgactcatgtttataattatgatatcccacaagatcca
gaaagctatgtacaccgtattggacgtacaggtcgtgctggaaaaagtggtgtttccgtt
acttttgtaacaccaaatgaaatgaattatctgcacgttattgaaaacttaacgaaaaaa
cgtatgacgccgatgcgtccaccttctgataaagaagcgcttgaaggacaaattaatcaa
gcagtcgaattgattgatgaaaaaatggctgaaaatgggctagataagtatagtaaagac
gcagatgagttgttgaagcattattcagcacaagatctggctgcattattactaaaaaca
cttgctaaagacccagctgaagttgttcctgtaaaaattacgccagagcgtccgttacct
aaaggaaaatcaaataagggacgtcgtaaaaacgattcacataatcgtaataacagaaac
tataaacaagatcgtcgtaaaaataataataaagattatcataaaaaaaataataaccaa
tccagtaagagtggctcccctaaaaaaagccgacgtggaaatgaaaagaaacaagacttt
gttattcgaaacggtcaaaactaa
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