Thermodesulfobacterium geofontis: TOPB45_0200
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Entry
TOPB45_0200 CDS
T01547
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
top
Thermodesulfobacterium geofontis
Brite
KEGG Orthology (KO) [BR:
top00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
top03016
]
TOPB45_0200
Enzymes [BR:
top01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TOPB45_0200
Transfer RNA biogenesis [BR:
top03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TOPB45_0200
Prokaryotic type
tRNA splicing ligases
TOPB45_0200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
RuvA_N
Motif
Other DBs
NCBI-ProteinID:
AEH22315
UniProt:
F8C2T8
LinkDB
All DBs
Position
complement(190739..192169)
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AA seq
476 aa
AA seq
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MELKKLKKISDYEWEIPPYGDMKVPGKIFADEKLIEEMDEKVYEQVCNVASLPGIVKASI
AMPDAHWGYGFPIGGVAAFDPDAGGIISVGGVGYDISCGVRTLLSPLTKKEVEPYLEKLV
RELFETVPSGVGSEGEIKLSPSQLDEVLVGGAKWAVEKGYGELEDLEYIEEKGCMPGADP
SYVSMEAKKRQHRQIGTLGSGNHYLEIQYVAEIYDEKTASAFGLFKDQVVITFHCGSRAL
GHQIATDYLPILAKAARKYGIPIKEKELVCAPINSPEGEQYFKAMVCGVNCALANRQVIT
HLVREVVRKFFPGIHLKVLYDVSHNTCKVEYHEVNGKRLKLYVHRKGATRAWGPGREELP
KAYREVGQPIIIGGSMGTASYILVGTSEGEEKAFGSACHGAGRTMSRHQAIKSFRADDII
EKLRKKGIIVIGKSKKGLAEEAPEAYKDVNEVINATCKAGLTKKVAKLIPMGCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggagctaaaaaagctaaaaaagatttctgattatgaatgggaaattcctccttatggg
gatatgaaagttcccggaaagatttttgctgatgaaaaactcattgaagagatggatgaa
aaggtttatgaacaagtttgcaatgtggcaagtttacctggtattgtaaaagcctctatt
gctatgcctgatgctcattggggttatggatttcctataggaggggtagctgcctttgat
ccagatgcaggaggaattatctcagttggtggtgtaggatacgatatttcttgtggagta
agaactcttctaagtccattaactaaaaaagaagtagaaccttatttagaaaaacttgtt
agagaactttttgaaacagttccttctggtgttggttctgaaggagaaataaaactatct
ccttctcaattagatgaggttttagtagggggagctaaatgggctgttgagaaaggatat
ggagagcttgaagaccttgaatatattgaagaaaaaggatgtatgcctggtgctgatcct
tcttacgtttctatggaagctaaaaaaagacaacatagacaaataggtaccctcggttca
gggaatcattatcttgagatccaatatgtagcagaaatttatgatgaaaaaactgcttct
gcttttggattattcaaagaccaggtagttattactttccattgtggatcaagagctctt
gggcatcaaatagcaaccgattatttaccaattttagcaaaagcagcaagaaaatatgga
atacctataaaagaaaaagaattagtctgtgcacctataaattcaccagaaggagaacaa
tattttaaagctatggtatgtggagtaaattgtgctcttgctaatcgtcaagtaataact
catttagttagagaggttgttagaaaattttttcccgggattcatttaaaagtactttat
gatgtaagccataatacctgtaaagtagagtatcatgaagtaaatggtaaaagacttaaa
ctctatgttcatagaaaaggagcaacaagagcttggggacctggaagagaggagttacct
aaagcttatagagaagtaggacaaccgattataataggcggttctatgggaacagcatct
tatattttagttggaacctctgaaggagaggaaaaggcttttggttctgcttgccatgga
gcaggaagaactatgagtagacatcaggctataaaatcttttagagcagatgatataata
gaaaaacttagaaaaaaaggaattattgttatcggaaaatcaaaaaagggacttgcagag
gaagctccagaagcttataaagatgttaatgaagttattaatgctacttgtaaagctggt
ttaactaaaaaagttgctaaacttattcctatgggatgtataaaaggataa
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