Thermodesulfobacterium geofontis: TOPB45_0309
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Entry
TOPB45_0309 CDS
T01547
Name
(GenBank) UvrABC system protein B
KO
K03702
excinuclease ABC subunit B
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TOPB45_0309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
top03400
]
TOPB45_0309
DNA repair and recombination proteins [BR:
top03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TOPB45_0309
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TOPB45_0309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
Kinesin
UB2H
AAA_22
SWI2_SNF2
Microtub_bd
Cas3-like_C_2
DUF87
Motif
Other DBs
NCBI-ProteinID:
AEH22422
UniProt:
F8C3A8
LinkDB
All DBs
Position
complement(306722..308734)
Genome browser
AA seq
670 aa
AA seq
DB search
MHYIKTEANFKLKADIEPKGDQPKAIEELVKGVKAGIKHQVLLGVTGSGKTFTMANVIAK
VGKPTLVIAPNKTLAAQLYNEFKKLFPENAVEYFVSYYDYYQPEAYVPITDTYIEKDASI
NDFIDRLRHSATAAVLSRRDVIVVASVSCIYGLGSPDEYFQKHLYLRVGAKIRRDELLRA
LVTMHYERTEMDFTRATFRVRGDVIEIFPSNEEKRAVRVSLWGNEIEEIKIIDPFRGKVL
GKVDSVIIFPASHYVTSEDRLRWAIEEIKKELKERVEYFKSKGLYLFAERLEKRTLYDLE
LLSEIGYCKGIENYSRYLDGRKPGEPPYTLLDYFPDDFLLFIDESHITIPQLRGMYRGDR
SRKETLVEYGFRLPSALDNRPLTFEEFEERVNQVIYVSATPGEYEIEKAEGRVIEQIIRP
TGLLDPEVEVRPSENQVEDLFFEIKKRISAKERVLVCTLTKRLAEELTDYYKELGIKACY
MHSDLKTLERARIIRDLRKGVYDVLIGINLLREGLDLPEVSLIAILDADKEGFLRSERSL
IQMIGRASRNVNGKAILYAQTITPAIKKAIEETQRRRRIQEEYNKKHGIIPKSVVKSLDD
PLMRMVEADFVDLEKIVEPIETFESLETLRAEIERVEKEMKEAAKNYEFEKAAILRDRLF
SLKQLALQWS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcattacataaagactgaagcaaattttaaattaaaagcagatattgaaccaaaggga
gatcagccaaaggctatagaagaattagtaaagggtgttaaagcaggaataaaacatcaa
gtcttacttggagtcactggatctggaaaaacctttactatggcaaatgtaattgctaag
gttgggaagcctactctggttattgctcccaataaaactttagctgcacagctctataat
gaatttaaaaaactttttccagaaaatgcagtagaatattttgtctcctattatgattat
tatcaaccagaagcttatgttcctataactgatacttatatagaaaaggatgcatctatt
aatgactttatagatagacttagacattccgcaactgcagcagttctttcgagaagggat
gtaattgtcgtagcaagtgtttcttgtatctatggtcttggttcccctgatgagtatttc
caaaaacatctttatttgagagtaggagcaaaaataagaagagatgaacttttaagagct
cttgtaactatgcattatgaaagaactgagatggattttacacgtgccacttttagagta
agaggagatgtaattgaaatctttccatccaacgaagaaaaaagagctgtaagagtaagt
ctttggggaaatgaaatagaagagattaaaatcattgatccttttagaggaaaggtttta
ggaaaagttgatagtgtaataatttttcctgcaagtcattatgttacctcagaagataga
ctcagatgggcaatagaagaaattaaaaaagaactgaaagaaagagtagaatattttaaa
agcaaagggctttatctttttgctgaaagacttgaaaaaagaactctttatgatttagaa
cttttaagtgaaataggttattgtaagggaattgaaaactatagtagatatttagatgga
agaaaacccggagagcccccttatacacttttggattactttccggatgattttctcctt
tttatagatgaaagtcatataactattcctcaattaagaggaatgtatagaggtgataga
agtaggaaagaaactttggtagaatatggttttagacttccatctgctttagataataga
ccacttactttcgaagaatttgaagaaagggtaaaccaagtaatttatgtttcagcaact
ccaggagaatatgaaatagaaaaagcagaaggaagagttatagaacagattataagacca
acaggtcttcttgatcctgaagtagaagtaagaccctctgaaaatcaagttgaagatcta
ttttttgaaattaaaaaaagaatatcagccaaagaaagagttttagtttgtactcttact
aaaagacttgcagaagaattgacagattattataaagaactcgggataaaggcatgctat
atgcactcagatttaaaaaccttagagagagcaagaattataagggatttaagaaaggga
gtttatgacgtccttataggaataaatcttttgagagaaggacttgatcttcctgaagtt
tcattgattgctatacttgatgctgataaagaaggttttttaagatctgaaagaagtctt
atacaaatgataggaagagcctcaagaaatgttaatggaaaggctattctatatgctcaa
actattaccccagccattaaaaaggctatcgaagaaacacaaaggagaagaagaattcaa
gaggaatataataaaaaacatggaataattcctaaaagtgtagtaaaatctttagatgat
cctctcatgagaatggttgaagctgattttgtagatctggaaaaaattgtagaacctatt
gaaactttcgaaagtttagaaactttgagagctgagattgaaagggttgaaaaagaaatg
aaagaagcagctaaaaattatgaatttgaaaaagctgctattttaagagacagactcttt
tccttaaaacaacttgctttacaatggagttaa
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