Thermodesulfobacterium geofontis: TOPB45_0402
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Entry
TOPB45_0402 CDS
T01547
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03410
Base excision repair
top03430
Mismatch repair
top03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TOPB45_0402
03430 Mismatch repair
TOPB45_0402
03440 Homologous recombination
TOPB45_0402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
top03400
]
TOPB45_0402
DNA repair and recombination proteins [BR:
top03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TOPB45_0402
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TOPB45_0402
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TOPB45_0402
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Urm1
Motif
Other DBs
NCBI-ProteinID:
AEH22506
UniProt:
F8C3Q5
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All DBs
Position
397946..399625
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AA seq
559 aa
AA seq
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MTSTKLWINKVPNQELFQEFVTQGFFTPLLAKILINKGFSDIKSAYSFLYPQLSDFSNPF
IIPDMKLAVERIFKAIKAKEKIVIYGDSDADGIIGTFILYDFLKNFTPYVDWLIPSKTEE
GYGFHAKFLPYFKAKGISLIITVDVGISAYHTVNSAKALNIDVIVTDHHEIISKPETITI
SGKLTQPSSPLYYLCGAGVVFALIRALRSYLLSQGFFVDKEPPFLRKYLELVSLATLADM
VPLIGENRLITFFGFRDLLNPYFPCTKILLERENLKYGLSEEDLYYKIIPKFNSAGRLGK
PEIVFEFLSSVDKVSAEKTLSQIENLNQERQTLEEEILKTLNFQLNNVCEDSKFLFLTFE
NIPKGLLGLIANRFKNLYNLPTIVISQEDEIAHGSIRSPSEINFLKILSQCEDLLIQFGG
HKYALGFKIHKNLIPEFKIRLEKILKSNHIPSSSNLIYIDAETNLSELLYRENLFAFEAF
HPYGEGHSPPALLLKNFEIKEIKILKEKHSKLILQKEDKELSAIFFNKLLEKKEINLIVG
TPFINSFTGNLELKIEDVK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaaccaagctttggattaataaggtccctaatcaagaactctttcaagaattt
gttactcaaggcttctttactcctcttttagcaaagattcttattaataaaggattttca
gatataaaatctgcctattcttttctttatcctcaactttctgacttttccaatcctttt
ataattcctgatatgaagcttgcagttgaaaggatctttaaagctattaaagctaaagaa
aaaatagttatttacggagattctgatgcagatgggattataggaactttcatcctttat
gattttcttaaaaattttactccctatgtagattggttaattccaagtaaaactgaagaa
ggatacggatttcatgctaaattcctaccctattttaaagctaagggtataagtttaatt
ataactgttgatgtgggaatatctgcttatcacacagtaaattcagctaaagctttaaac
atagatgtaattgtaactgatcatcatgaaataatctctaaaccagaaactattactata
agtggtaaacttacacagccttcttctcctctttattatttatgcggtgctggagttgtt
tttgccttaataagagctttaagatcttatcttttgtctcaaggattctttgtagataaa
gaaccaccttttttaagaaaatatttggaacttgtttcccttgcaactttagcagatatg
gtacctttaattggagaaaatcgtcttattactttttttggatttagagaccttttaaat
ccttatttcccctgtacaaaaattttacttgaaagagaaaatctaaaatatggtttatct
gaagaggatctctattataaaatcattcctaaattcaattctgctggaaggcttggcaaa
cctgagatagttttcgaattcctttcatcagtagataaggtttctgcagaaaaaaccctt
tctcaaatcgaaaacttaaatcaagaaagacaaactctggaagaagaaattctaaaaact
cttaatttccagcttaataatgtttgtgaagattctaaatttttatttttaacttttgaa
aacattcccaaaggtttacttgggctcattgctaatagatttaaaaatttatataatttg
cccaccatagttatttctcaagaagatgaaatagctcatggttcaatacgctcaccctct
gaaataaattttctaaaaattttatctcaatgtgaagatcttttaatccaatttggtgga
cataaatatgctttaggtttcaaaatacacaaaaatcttattcctgaatttaaaatacgc
cttgaaaaaattttaaaatctaatcatatcccctcttcttctaatttaatttatattgat
gctgagacaaatttatcagagcttttatatagggaaaatctttttgcctttgaagcattt
catccttatggagaaggacattcacctcctgctcttcttcttaaaaattttgaaataaaa
gaaataaaaattttaaaggaaaaacattcaaaactcattttgcaaaaagaggataaagaa
ctttctgccatattttttaataagcttttagaaaagaaagaaataaatttaattgtagga
actccttttataaatagttttacgggaaatttggagttaaaaatagaagatgttaaatga
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