Entry |
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Name |
(GenBank) DNA polymerase III, alpha subunit
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KO |
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Organism |
top Thermodesulfobacterium geofontis
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:top00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TOPB45_0433
03430 Mismatch repair
TOPB45_0433
03440 Homologous recombination
TOPB45_0433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:top03032]
TOPB45_0433
03400 DNA repair and recombination proteins [BR:top03400]
TOPB45_0433
Enzymes [BR:top01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TOPB45_0433
DNA replication proteins [BR:top03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TOPB45_0433
DNA repair and recombination proteins [BR:top03400]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TOPB45_0433
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
433977..437405
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AA seq |
1142 aa
MSDFVHLHLHTEWSLLDGAIRIEDLTKRLIEYGMPGCAVTDHGTLYGIIHFYTKLKEVGL
KPIIGCEFYVAEGSRFEKKASKRGEAGTHLVLLAKNKEGYQNLLKLASIAYLEGFYYRPR
IDKEVLKQYHQGLIAMSACLEGEIPRLLLAGNLNKAIEVAKWYKELFKDDFYLELQKNDL
PEQDKVNEGILEIAEKLRIKCVATADCHYLDKEDALAHEVLLCIQTGHKLSDPDRFRFNT
DKLYFASAEEMRERFKNYPLEIITNSMEIFEKIDLEIKTDEILFPKAKIPEGETVESYFI
KKAREGLERKLKELKAKGQLAEDEEKYWQRLEYEIDTIIEKGYASYFLIVADFVNWAKSR
GIPVGPGRGSAAGALTSYALGITNLDPLRWGLLFERFLNKERPSLPDIDVDFCMERRDEV
IEYVANTYGKEYIAKIATFGQLKARQVVRDVGRVLGFKPKEIDPIAKMISPGINVTLEKE
LQREEFKELIKRSEKIKKLFELAKKLERLPRHVSQHAAGVIIAGKPITEVAPLMKGDEGE
ILVQFDMKACEAVGLIKFDFLGLKTLTIIDHTLKLIERYEGIKINIDDIPLNDEKTYELL
RKGETDGVFQLESDGMKELLRRLKPTDFNDLIAVLALYRPGPLEGGLVDQYIETKHGKRK
PEYLHPLLEPILKETYGVIVYQEQVMEIARAFAGYTLGEADLLRRAIGKKEKELMENLKK
EFISRSVERNIPLEIAEKVYDLIEKFADYGFNKSHSAAYALLSYQTAYLKAHYPVYFIAG
ILTYSANKSEEVSKYIALANEMGIKILPPDINKSEAGFTVEGSAIRIGLYAIKNVGEEAV
NEILKKRPYESFIDFCSKVDTKKVNRKTIEALIKAGAFDSLEPNRAKLMHNLPSVLSISN
QAKFSILFKQGSLLSLDKTFNLEEVPPWDLDETLNFEKSALGFYLTDHPMRRFRKWINIF
SSYYVEKIKEIEEGTKIIVAGVISEIKVKSTRNGEKMAIIKIEDEKSSLKALVFPDLYNQ
YMHLLKEGAMLWFKGEVDKEEENKVLLIEDLAELKDLKFFKDGKLNILFSSENFKEEKLE
YFKNFLIKEEDLKSGLPIQLYLKYPDYLVCFEINGYKIDPSYEHLSLLLDTFEEIHLKVI
FS |
NT seq |
3429 nt +upstreamnt +downstreamnt
atgtctgattttgttcatctccatcttcatacagaatggagtctccttgatggagctata
agaatagaagatcttactaaaagactcatagaatatggaatgccagggtgtgctgtaact
gatcatggaactttatatggaattattcatttttataccaagttaaaagaagtaggtctt
aagcccattataggttgcgaattttatgtagctgaggggtctcgttttgaaaaaaaagca
tcaaaaagaggagaagccgggacacatttagttttgcttgccaaaaataaagagggttat
caaaaccttttaaaattagcctcaattgcatatttagaaggattttactatagacctcgc
atagataaagaagttcttaagcaatatcatcaagggcttatagcaatgagtgcctgtttg
gaaggggaaattccgagacttcttttagcaggaaatttaaataaggctatagaagtagcc
aaatggtacaaagagttatttaaggatgatttttatttagaacttcaaaaaaatgattta
cccgaacaagacaaagttaacgaggggattttagagatagctgaaaaattgagaattaaa
tgtgttgctactgcagattgtcattacttagataaagaggatgctcttgctcatgaagtc
cttttatgtattcaaacaggacataaactttctgatcccgatagatttaggtttaataca
gataagctttattttgcaagtgctgaagaaatgagagaaagattcaaaaattatccttta
gaaattattactaattctatggaaatttttgaaaaaatagatttagaaatcaaaactgat
gaaattttatttcctaaggcgaaaattccagaaggtgaaactgtagaaagttattttatt
aaaaaagcaagagagggtttagaaaggaaacttaaagaacttaaagccaaaggtcaactt
gcagaagatgaagaaaaatattggcaaagattagaatatgagatagatactataattgaa
aaagggtatgcaagttattttttaattgtggcggactttgtaaattgggcaaaatctcgt
ggaattcctgttggtccaggaagaggttctgctgcaggtgcacttacatcatatgctctt
ggaattacaaatttagatcctttgagatggggacttctttttgaaagattcttaaataaa
gaaaggccaagtcttcctgatatagatgtagatttttgcatggaaagaagagatgaggtt
atagaatatgtagctaatacttacggaaaggaatatattgctaaaattgcaaccttcggg
caactgaaagcaagacaagtagtaagagatgtaggaagggtacttggatttaaacctaag
gaaatagatcctatagcaaagatgataagtcctggaataaatgtaaccttagaaaaggaa
ttacaaagagaggagtttaaagaattaattaaaagatctgaaaaaataaaaaaacttttt
gaacttgccaaaaaacttgaaagattaccaaggcatgtaagtcaacatgcagcaggagtt
attatagcaggaaaaccaattacagaagttgcgcctttaatgaaaggagatgaaggggaa
attcttgttcaatttgatatgaaagcttgtgaagctgtaggactaataaaatttgacttt
ttaggtttaaaaaccctcaccatcattgatcataccttaaagcttatagaaagatatgaa
ggaataaaaataaatattgatgatatccccttaaatgatgaaaaaacttatgaactttta
aggaaaggagaaactgatggagtatttcaattagaatcagacggaatgaaagagttatta
aggaggcttaaacctacagattttaacgatcttattgcagtattagctttatatagacca
ggccccttagaaggaggattagttgatcagtatatagaaacaaaacatggaaaaagaaaa
ccagaatatttgcatccacttttagagcctattttaaaagaaacctatggagtaatagta
tatcaggaacaggtaatggaaatagcaagagcatttgcaggttataccttgggagaggca
gatttattaagaagggctataggtaaaaaagaaaaagaacttatggaaaatctaaaaaaa
gaatttatttctcgttctgttgaaagaaatatacctcttgaaatagctgaaaaggtatat
gatttaattgaaaaatttgcagattatggattcaataaaagtcattcagcagcctatgct
cttctatcctatcaaactgcttatttaaaagcacattaccccgtatacttcattgcagga
attcttacctattctgctaacaaaagcgaagaagttagtaaatatatagctttagcaaat
gagatgggaataaaaattttaccaccagacataaataaaagtgaagcaggatttacagta
gaaggttcagccattagaataggactttatgccattaaaaatgtaggagaagaagctgta
aatgaaattttaaagaaaagaccttatgagtcttttatagatttttgtagtaaagtggat
actaaaaaggtaaatagaaaaactatagaagcccttattaaagcaggtgcttttgacagt
ttagaacctaatagagctaaacttatgcataatcttccttcagttctttctatttctaac
caagctaaattttctattctttttaaacaaggttctttactaagcttagataaaaccttt
aatttggaagaggttcctccttgggatttagatgaaacattaaattttgaaaaatccgct
ttgggattttatcttactgatcatccaatgagaagatttagaaaatggatcaatattttt
tcttcttattatgtggaaaaaataaaagaaattgaggaaggaacaaaaattattgtagct
ggagttatttcagaaataaaagtaaaaagcaccagaaacggagaaaaaatggctattata
aaaatagaagatgaaaagtcatctttaaaagctcttgttttccccgatttgtataatcag
tatatgcaccttttaaaagaaggagcaatgctttggtttaaaggggaagtagataaagag
gaagaaaacaaggttcttttaatagaagatttggcagagttaaaagatttaaaatttttt
aaagatgggaaattaaatattctattttcttctgaaaattttaaagaagaaaaattagaa
tattttaagaattttttgataaaagaagaagatttaaaatcaggattacctatccaactt
tatttaaaatatccagactatttagtatgttttgaaataaacggatataaaatagacccc
tcttatgaacatttatctttattattggacacctttgaagaaattcatttaaaagtgatt
ttttcataa |