KEGG   Thermodesulfobacterium geofontis: TOPB45_0433
Entry
TOPB45_0433       CDS       T01547                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
top  Thermodesulfobacterium geofontis
Pathway
top03030  DNA replication
top03430  Mismatch repair
top03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:top00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TOPB45_0433
   03430 Mismatch repair
    TOPB45_0433
   03440 Homologous recombination
    TOPB45_0433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:top03032]
    TOPB45_0433
   03400 DNA repair and recombination proteins [BR:top03400]
    TOPB45_0433
Enzymes [BR:top01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TOPB45_0433
DNA replication proteins [BR:top03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     TOPB45_0433
DNA repair and recombination proteins [BR:top03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     TOPB45_0433
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: AEH22537
UniProt: F8C3Z9
LinkDB
Position
433977..437405
AA seq 1142 aa
MSDFVHLHLHTEWSLLDGAIRIEDLTKRLIEYGMPGCAVTDHGTLYGIIHFYTKLKEVGL
KPIIGCEFYVAEGSRFEKKASKRGEAGTHLVLLAKNKEGYQNLLKLASIAYLEGFYYRPR
IDKEVLKQYHQGLIAMSACLEGEIPRLLLAGNLNKAIEVAKWYKELFKDDFYLELQKNDL
PEQDKVNEGILEIAEKLRIKCVATADCHYLDKEDALAHEVLLCIQTGHKLSDPDRFRFNT
DKLYFASAEEMRERFKNYPLEIITNSMEIFEKIDLEIKTDEILFPKAKIPEGETVESYFI
KKAREGLERKLKELKAKGQLAEDEEKYWQRLEYEIDTIIEKGYASYFLIVADFVNWAKSR
GIPVGPGRGSAAGALTSYALGITNLDPLRWGLLFERFLNKERPSLPDIDVDFCMERRDEV
IEYVANTYGKEYIAKIATFGQLKARQVVRDVGRVLGFKPKEIDPIAKMISPGINVTLEKE
LQREEFKELIKRSEKIKKLFELAKKLERLPRHVSQHAAGVIIAGKPITEVAPLMKGDEGE
ILVQFDMKACEAVGLIKFDFLGLKTLTIIDHTLKLIERYEGIKINIDDIPLNDEKTYELL
RKGETDGVFQLESDGMKELLRRLKPTDFNDLIAVLALYRPGPLEGGLVDQYIETKHGKRK
PEYLHPLLEPILKETYGVIVYQEQVMEIARAFAGYTLGEADLLRRAIGKKEKELMENLKK
EFISRSVERNIPLEIAEKVYDLIEKFADYGFNKSHSAAYALLSYQTAYLKAHYPVYFIAG
ILTYSANKSEEVSKYIALANEMGIKILPPDINKSEAGFTVEGSAIRIGLYAIKNVGEEAV
NEILKKRPYESFIDFCSKVDTKKVNRKTIEALIKAGAFDSLEPNRAKLMHNLPSVLSISN
QAKFSILFKQGSLLSLDKTFNLEEVPPWDLDETLNFEKSALGFYLTDHPMRRFRKWINIF
SSYYVEKIKEIEEGTKIIVAGVISEIKVKSTRNGEKMAIIKIEDEKSSLKALVFPDLYNQ
YMHLLKEGAMLWFKGEVDKEEENKVLLIEDLAELKDLKFFKDGKLNILFSSENFKEEKLE
YFKNFLIKEEDLKSGLPIQLYLKYPDYLVCFEINGYKIDPSYEHLSLLLDTFEEIHLKVI
FS
NT seq 3429 nt   +upstreamnt  +downstreamnt
atgtctgattttgttcatctccatcttcatacagaatggagtctccttgatggagctata
agaatagaagatcttactaaaagactcatagaatatggaatgccagggtgtgctgtaact
gatcatggaactttatatggaattattcatttttataccaagttaaaagaagtaggtctt
aagcccattataggttgcgaattttatgtagctgaggggtctcgttttgaaaaaaaagca
tcaaaaagaggagaagccgggacacatttagttttgcttgccaaaaataaagagggttat
caaaaccttttaaaattagcctcaattgcatatttagaaggattttactatagacctcgc
atagataaagaagttcttaagcaatatcatcaagggcttatagcaatgagtgcctgtttg
gaaggggaaattccgagacttcttttagcaggaaatttaaataaggctatagaagtagcc
aaatggtacaaagagttatttaaggatgatttttatttagaacttcaaaaaaatgattta
cccgaacaagacaaagttaacgaggggattttagagatagctgaaaaattgagaattaaa
tgtgttgctactgcagattgtcattacttagataaagaggatgctcttgctcatgaagtc
cttttatgtattcaaacaggacataaactttctgatcccgatagatttaggtttaataca
gataagctttattttgcaagtgctgaagaaatgagagaaagattcaaaaattatccttta
gaaattattactaattctatggaaatttttgaaaaaatagatttagaaatcaaaactgat
gaaattttatttcctaaggcgaaaattccagaaggtgaaactgtagaaagttattttatt
aaaaaagcaagagagggtttagaaaggaaacttaaagaacttaaagccaaaggtcaactt
gcagaagatgaagaaaaatattggcaaagattagaatatgagatagatactataattgaa
aaagggtatgcaagttattttttaattgtggcggactttgtaaattgggcaaaatctcgt
ggaattcctgttggtccaggaagaggttctgctgcaggtgcacttacatcatatgctctt
ggaattacaaatttagatcctttgagatggggacttctttttgaaagattcttaaataaa
gaaaggccaagtcttcctgatatagatgtagatttttgcatggaaagaagagatgaggtt
atagaatatgtagctaatacttacggaaaggaatatattgctaaaattgcaaccttcggg
caactgaaagcaagacaagtagtaagagatgtaggaagggtacttggatttaaacctaag
gaaatagatcctatagcaaagatgataagtcctggaataaatgtaaccttagaaaaggaa
ttacaaagagaggagtttaaagaattaattaaaagatctgaaaaaataaaaaaacttttt
gaacttgccaaaaaacttgaaagattaccaaggcatgtaagtcaacatgcagcaggagtt
attatagcaggaaaaccaattacagaagttgcgcctttaatgaaaggagatgaaggggaa
attcttgttcaatttgatatgaaagcttgtgaagctgtaggactaataaaatttgacttt
ttaggtttaaaaaccctcaccatcattgatcataccttaaagcttatagaaagatatgaa
ggaataaaaataaatattgatgatatccccttaaatgatgaaaaaacttatgaactttta
aggaaaggagaaactgatggagtatttcaattagaatcagacggaatgaaagagttatta
aggaggcttaaacctacagattttaacgatcttattgcagtattagctttatatagacca
ggccccttagaaggaggattagttgatcagtatatagaaacaaaacatggaaaaagaaaa
ccagaatatttgcatccacttttagagcctattttaaaagaaacctatggagtaatagta
tatcaggaacaggtaatggaaatagcaagagcatttgcaggttataccttgggagaggca
gatttattaagaagggctataggtaaaaaagaaaaagaacttatggaaaatctaaaaaaa
gaatttatttctcgttctgttgaaagaaatatacctcttgaaatagctgaaaaggtatat
gatttaattgaaaaatttgcagattatggattcaataaaagtcattcagcagcctatgct
cttctatcctatcaaactgcttatttaaaagcacattaccccgtatacttcattgcagga
attcttacctattctgctaacaaaagcgaagaagttagtaaatatatagctttagcaaat
gagatgggaataaaaattttaccaccagacataaataaaagtgaagcaggatttacagta
gaaggttcagccattagaataggactttatgccattaaaaatgtaggagaagaagctgta
aatgaaattttaaagaaaagaccttatgagtcttttatagatttttgtagtaaagtggat
actaaaaaggtaaatagaaaaactatagaagcccttattaaagcaggtgcttttgacagt
ttagaacctaatagagctaaacttatgcataatcttccttcagttctttctatttctaac
caagctaaattttctattctttttaaacaaggttctttactaagcttagataaaaccttt
aatttggaagaggttcctccttgggatttagatgaaacattaaattttgaaaaatccgct
ttgggattttatcttactgatcatccaatgagaagatttagaaaatggatcaatattttt
tcttcttattatgtggaaaaaataaaagaaattgaggaaggaacaaaaattattgtagct
ggagttatttcagaaataaaagtaaaaagcaccagaaacggagaaaaaatggctattata
aaaatagaagatgaaaagtcatctttaaaagctcttgttttccccgatttgtataatcag
tatatgcaccttttaaaagaaggagcaatgctttggtttaaaggggaagtagataaagag
gaagaaaacaaggttcttttaatagaagatttggcagagttaaaagatttaaaatttttt
aaagatgggaaattaaatattctattttcttctgaaaattttaaagaagaaaaattagaa
tattttaagaattttttgataaaagaagaagatttaaaatcaggattacctatccaactt
tatttaaaatatccagactatttagtatgttttgaaataaacggatataaaatagacccc
tcttatgaacatttatctttattattggacacctttgaagaaattcatttaaaagtgatt
ttttcataa

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