Thermodesulfobacterium geofontis: TOPB45_0788
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Entry
TOPB45_0788 CDS
T01547
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOPB45_0788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
top03021
]
TOPB45_0788
03019 Messenger RNA biogenesis [BR:
top03019
]
TOPB45_0788
Transcription machinery [BR:
top03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
TOPB45_0788
Messenger RNA biogenesis [BR:
top03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TOPB45_0788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEH22889
UniProt:
F8C5B7
LinkDB
All DBs
Position
complement(768471..769811)
Genome browser
AA seq
446 aa
AA seq
DB search
MDQPVNGKLISENLKISISEELPETITSPVYLSELRKKSLSELYALGEKLGIENIYNYYK
KSEVIYQIVSNLLVKEIEVIVEGVLEVLPEGFGFLRFNDYNYLPSSEDIYVSPPQIRKFG
LKTGDTILGYIRQPKEGEKYFALAKIEKVNYYPPEVVRTRTPFDHLTPIHPNKWLRLETD
PENYSTRIIDLFVPIGKGQRGLIVAPPRTGKTVLLQNIANGIVKNYPEVHLIILLVDERP
EEVTEMQRTVPRAEIISSTFDEPPQKHTQVAEIVIEKAKRLVECKYDVVILLDSLTRLTR
AYNVVVPSSGKLLSGGIDANALHKPKRFFGAARNVEEGGSLTIIATCLIDTGSRMDEVIF
EEFKGTGNMEIVLDRRLADRRIWPAIDIHLSGTRKEELLLPPDILHKVWLLRKVLSPLNP
VECMEFLLEKLKDTKSNEEFLSKMNQ
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcctgtaaacgggaaacttatttctgaaaacttaaaaatttcaatttctgaa
gaactacctgaaacaattacctcacctgtatatctttctgaattaagaaaaaaatccctt
tctgaactttatgccttaggagaaaaattaggaattgaaaatatatataattattacaag
aaatctgaagttatctatcaaatagtaagtaaccttttagtaaaagaaattgaagttatt
gttgagggtgttttagaagttttacctgaagggtttggatttttgagatttaatgactat
aattatctaccaagctctgaggatatatatgtttctcctcctcaaataaggaaattcggt
cttaaaacaggggataccatattaggatatataagacaaccaaaagaaggagaaaaatat
tttgccttagctaaaattgaaaaagtaaattattatcctccagaagtagtaagaacaaga
acaccctttgatcatctcacacctattcatcctaataaatggcttcgtttagaaacagat
ccagaaaattattctactcgtattatagatttatttgttcctattggaaaaggacaaaga
ggtctcattgtggctcccccaagaactggaaaaactgttttattgcaaaatattgctaat
ggaatagtaaaaaattatcctgaggtacatcttatcattcttcttgttgacgaaagacct
gaggaagtaacagaaatgcaaagaactgtcccaagagcagaaattataagttctacattt
gacgaacctccccagaaacatacccaagttgcagaaatagttattgaaaaggcaaaaagg
ttagttgaatgtaaatatgatgtggtaattttacttgacagcttaacacgtttaacaaga
gcttacaatgtagtagttccctcaagtggtaagcttctttccggtggaatagatgctaat
gctcttcataaaccaaaaagattttttggagcagcaagaaatgtagaagaaggaggaagt
cttactataattgcaacttgtcttattgacacaggaagtagaatggatgaagtaatattt
gaagaatttaaaggaacaggaaatatggaaatagttttagatagacgcttagcagataga
agaatctggccagctattgatattcatttaagcggaacaagaaaagaagaattgcttctt
cctcctgatattttacataaagtttggttattaagaaaggttctctctcccttaaatcca
gtagaatgcatggaatttttattagaaaaattgaaagacactaaaagtaatgaagaattc
ttaagtaagatgaatcaataa
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