Thermodesulfobacterium geofontis: TOPB45_1161
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Entry
TOPB45_1161 CDS
T01547
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOPB45_1161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
top03019
]
TOPB45_1161
03016 Transfer RNA biogenesis [BR:
top03016
]
TOPB45_1161
Enzymes [BR:
top01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TOPB45_1161
Messenger RNA biogenesis [BR:
top03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TOPB45_1161
Transfer RNA biogenesis [BR:
top03016
]
Prokaryotic type
tRNA degradation factors
TOPB45_1161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KH_PNO1_2nd
KH-I_KHDC4-BBP
OB_RRP5_4th
F-box-like_2
Motif
Other DBs
NCBI-ProteinID:
AEH23249
UniProt:
F8C694
LinkDB
All DBs
Position
1159348..1161456
Genome browser
AA seq
702 aa
AA seq
DB search
MERLEVEIGSSAPIIIETGEYARFSDGAVIVKQGDTAVLVTAVMGENLVEGIDFVPLSVD
YREQSSAWGKIPGGFIKREGKPTDREVLVSRLIDRSIRPLFPEGFFYDVVVTALTLSADE
KFDPDVLSIIGASTALHISKIPFEGPLAGIRIARIDGEFLINPTYEERQKADLDLVVACS
KDAIVMVEGGGKEVEEKVVIDALYLALTKCQALISAQENLRNQIGIPKKEIEILNLPEEL
INRLNEFCYNKIIKALEIPDKKLRKEELNKILEEFIASLENQEINKVALSYFYKKLVSQI
LRKKLFEEGKRIDGRTPDEIRPIEIKIHPFERPHGSAIFTRGQTQVFATVTLGSPEEAQM
VESIYEGETFKRFMLHYNFPPFSTGEARPWGPPRRREIGHGALAERALEPLIPPEDTFPY
IIRIVANVLESNGSTSMATVCAGSLALFDAGVPVSKHVAGIAMGLVMEEDKYIILTDILG
EEDQLGDMDFKVAGTKEGITSIQMDIKIKGLKKEIMEEALLKAKKARLFILEKMYSAIPE
PRKELSPYAPKIEIITVPEDKAFLIIGPGGKTVKEIREKTNTIIWVLEGGKVSITGKTKE
DIEAAKREIEAIIAEIEIGKIYEGKITRIEPYGLFVEVFPGKIGLLHISKMENPPKDLKS
AYSIGEKIRVKVLEFDELGRPRFTTKFDSEEGLTDERGGPIL
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggagagattggaggttgaaattggttcttctgcgccgattataattgaaactggtgaa
tacgccagattttctgatggagcagtaattgttaaacaaggagatactgcagttttggtt
actgcagttatgggagaaaatttagttgaagggatagattttgtcccgctttcagttgat
tatagagagcaatcctctgcatggggtaaaatccctggaggatttataaaaagagaaggg
aaaccaactgatagagaggttttagtttcccgtctaattgatcgttctataagacctctt
tttcctgaaggttttttctatgatgtagtggtaacagctttaactttatctgctgatgag
aaatttgatcctgatgttctctcaattataggagcctcaacagcattacatatttctaaa
attccttttgaaggtcctttagcaggtataaggatcgctagaatagatggagagttttta
atcaatcctacctatgaagaaagacaaaaggcagatttagatttggttgttgcctgttcc
aaagatgcaattgttatggttgagggaggaggaaaagaggttgaagaaaaagttgttata
gatgctctttatttggctttaacaaaatgtcaagctttaatatctgcccaagagaatcta
agaaatcaaataggtatccctaaaaaggagatagaaattcttaatttaccagaggaacta
ataaataggctaaatgaattttgttacaataaaataataaaagctttagaaattccagat
aaaaagttgagaaaagaagaacttaataaaattttagaagaatttattgcgagtttagag
aatcaagagattaataaggtagctcttagttatttttataaaaaattagttagccaaatt
ttaagaaaaaaactttttgaagaagggaaaagaattgatggaagaacccctgatgaaata
agaccaatagagataaaaatccatccctttgaaagacctcatgggagtgccatttttacc
agaggacaaacccaggtatttgctactgttaccttaggttcacctgaagaagcacaaatg
gttgaaagtatctatgaaggagaaacttttaaaagatttatgctccactataattttcca
cctttttctacaggggaggcaagaccctggggaccaccaagaagaagagaaataggacat
ggggctttagctgaaagagcacttgaacccttaattccaccagaagatacctttccctat
attattagaattgtagctaacgttcttgaatctaatggttccacttctatggcaactgtg
tgtgcaggttctcttgctttatttgatgcaggagttcctgtaagtaaacatgtagctggg
attgcaatgggacttgtgatggaggaagataaatatattatcttaacagatattttagga
gaggaagatcaattaggagacatggattttaaagttgcaggtacaaaagaaggaattaca
agtattcaaatggatataaaaataaaggggttaaaaaaagaaattatggaagaagcgtta
ttaaaagctaaaaaggcacgtttatttatattggaaaaaatgtattcagcaattccggag
cctcgtaaggaactttcaccttatgctcctaaaattgaaattataactgttccagaagac
aaagcattcttaattataggtccgggaggaaaaactgtaaaagaaataagagaaaaaact
aacactataatatgggttcttgagggaggaaaagtttctattactggaaaaacaaaagaa
gatatagaggcagcaaaaagagaaatagaagctataattgctgaaattgagataggtaaa
atttacgaaggaaagataacaagaatagaaccttatggactttttgtagaagtattccct
ggtaaaataggtcttttacatatttctaagatggaaaatcctcctaaggatttaaaatca
gcttatagtattggagaaaaaataagggtaaaggttttagaatttgatgaacttggaaga
ccaagatttactactaaatttgatagtgaagaaggtttaacagatgaaagaggaggacca
atactttaa
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