Thermodesulfobacterium geofontis: TOPB45_1594
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Entry
TOPB45_1594 CDS
T01547
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
top
Thermodesulfobacterium geofontis
Pathway
top03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
top00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TOPB45_1594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
top03019
]
TOPB45_1594
Messenger RNA biogenesis [BR:
top03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TOPB45_1594
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
HHH_5
DUF6249
Motif
Other DBs
NCBI-ProteinID:
AEH23672
UniProt:
F8C3V0
LinkDB
All DBs
Position
1599709..1601271
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AA seq
520 aa
AA seq
DB search
MNILLGIIIGFVIALFLLGIYLYIQKKKELEAKKTVENLIKDAEQKAKEILEKAEKDAKL
KLQQAEIEIKEKLLAHKHALEKEFEKKVKEVSLKEERLLHKEETLIKKEETLERKLKEVE
DLKALIEAEKKQIDEILKQTKEELERISGLTEKEAKELLLKKIEEELKEEKAKLIMKYEN
ETKEEAKRKSQEILAYAISKAAVLFVTEKTVSVVQLPNEEMKGRIIGREGRNIRTFETLT
GVDLLIDDTPEVVVLSCLDPLRREIARIALERLIADGRIHPSRIEEVVKQVEEEMEHHLM
EVGEKACFELGIYGLHPELIKMIGKLKYRTSYSQNVLQHSIETAIICGALASELGMDAKK
ARRAALLHDIGKASSYEMEGPHALIGAEIARKYGEEEDIVNAIASHHEDIPITSLLGIIL
QISDAISGARPGARRELLEAYIKRIKELEAIASSFEGVEKAFAIQAGREIRVIVDDKKIS
DEEAYILAREIAQKIEKELTYPGIIRVTVIRETRAIEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaatatccttttggggataataattggatttgtaattgctctctttttattggggatt
tatttatatattcaaaaaaagaaagaattagaagcaaaaaagacagtagaaaaccttatt
aaagatgctgaacaaaaagctaaagaaatcttagaaaaagctgaaaaagatgctaaatta
aaacttcaacaagcagaaattgaaataaaagaaaaacttttagcccataagcacgcttta
gaaaaagaatttgaaaaaaaagtaaaagaagtctctttaaaagaggaaaggctccttcat
aaagaagaaactcttatcaaaaaagaagaaactttagaaaggaaattaaaagaagttgaa
gatctaaaagcccttattgaggctgaaaaaaaacaaattgatgaaatattaaagcaaaca
aaagaagaattagaaagaatttccggacttacagaaaaggaggctaaggaattacttctc
aaaaaaatagaagaggaattaaaagaggaaaaagcaaaacttattatgaaatacgaaaac
gaaactaaagaagaggctaaaagaaaatcccaagaaattttagcttatgccatttcaaaa
gctgctgtgctttttgtaacagaaaaaacagtctctgtcgttcaacttccaaatgaagaa
atgaaaggaagaataattggaagagaaggaagaaatataagaactttcgaaactttaacc
ggcgttgaccttttaatagacgatactcctgaggttgtggttctatcatgtttagatcct
ttaagaagagaaatcgctcgtattgctttagaaagacttatagcagatggaagaatacat
ccctcaagaattgaagaagttgttaaacaggtagaagaggaaatggagcatcatctaatg
gaggtaggagaaaaggcttgttttgaattgggaatttatggactccatcctgaactcatt
aaaatgattggaaaattaaaatatagaacaagttacagtcaaaatgttttgcaacattca
attgaaacagccataatttgtggagccttagcaagtgaactaggaatggatgcaaaaaaa
gcaagaagagctgcactacttcatgatataggaaaagcttcttcctatgaaatggaaggt
cctcatgcattaataggtgctgaaatagcaagaaaatatggagaagaggaagatattgta
aatgcaatagcttctcatcatgaagatattcccattacgagtttattaggaataatcttg
caaatatctgatgctatatctggagcaagaccaggagcaagaagagagttattagaagct
tatataaaaagaataaaagaacttgaagcaattgcttcctcttttgagggggtagaaaaa
gcttttgctatacaagctggaagagaaataagagttatagtagatgataaaaaaataagt
gatgaagaagcctatatattagcccgtgaaattgctcaaaaaatagaaaaagaattgacc
tatccaggaattataagagtaactgtaattagagagacaagagctattgaatatgccaaa
taa
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