Thalassolituus oleivorans R6-15: R615_00400
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Entry
R615_00400 CDS
T03056
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03030
DNA replication
tor03410
Base excision repair
tor03420
Nucleotide excision repair
tor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R615_00400
03410 Base excision repair
R615_00400
03420 Nucleotide excision repair
R615_00400
03440 Homologous recombination
R615_00400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tor03032
]
R615_00400
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_00400
Enzymes [BR:
tor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R615_00400
DNA replication proteins [BR:
tor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
R615_00400
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
R615_00400
NER (nucleotide excision repair)
GGR (global genome repair) factors
R615_00400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
NYN_YacP
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AHK14638
LinkDB
All DBs
Position
complement(89432..92224)
Genome browser
AA seq
930 aa
AA seq
DB search
MSSNPVILVDGSSYLFRAFHAIPLLTNSKGVHTNAIKGVISMIKRLNKDYPESQVIVVFD
AKGKTFRNDIYSEYKAHRPPMPEELREQIQPIHDIIRAMGLPLLIIDGVEADDVIGTLAS
QAVQHQQDVVISTGDKDMAQLVNEHVALINTMTDTFMDIEGVKTKFGVPPEHIIDYLALM
GDKVDNIPGVPKVGEKTAVGLVAGLGSLEDIYANLDKVATLDFRGAKTLAPKLEEHKEQA
FLSKELATIKCDVELEFALPDFKNSDEHKEDLLALYRDLEFKAWIAELSSDPDLDVTTTN
AKSTASRASKGKPTEAAEVITDVMPDALEGHYEIILEQAALDAWIAQLKASSLFAFDTET
TSLNYKEAEIVGVSFAVEIGKAAYVPLAHDYDDAPQQLDRAAVLAQLKPLLEDKNQKKVG
QHIKYDAHVLANYGIQLQGVEFDTQLESYVLDSVGTKHDMDSLSLKYLGHKTITYEEVAG
KGAKQIGFNEVAIDVAGPYAAEDADITLRLHQVLWAKLQQQPSLAKVFTDIEMPVMPVLC
AMEEIGTIIDADMLHEQSQQIEQRLQQLEQEAHNLAGKVFNLGSPKQLGVILFEEQGLPV
LKKTPKGAPSTAEEVLAELAEDYELPRVITEHRGLAKLKNTYTDKLPMMVNAKTGRIHTS
YNQTIAATGRLSSTDPNLQNIPIRSEEGRRIRQAFIAAPGYKLVAADYSQIELRIMAHLS
GDEGLLSAFAEERDVHRATAAEVFGVSEAEVTDNQRRSAKAINFGLIYGMSAFGLAKQLG
IGRGEAQDYVNLYFQRYPGVKDYMDNTREQAKDQGYVETIYGRRLYLPDIKASNAARRQH
AERTAINAPMQGSAADIIKRAMIRVADWLPDSGFDARMLLQVHDELILEVRADQAEALAT
ELKTQMQCAAALKVPLLVEAGIGDNWEQAH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaccccgtgattcttgtagatggatcgtcgtatttatttcgtgcgtttcac
gcgatccccctactaaccaactccaaaggtgtacacaccaacgccattaaaggcgtgatc
agcatgatcaagcgcctaaataaggattatcccgagtcacaggttatcgtggtattcgat
gccaaaggcaaaaccttccgcaacgatatttacagcgaatacaaagcacatcgcccgcca
atgccagaagaactgcgcgaacaaatccagcccatccacgacattatccgtgccatgggc
ctgccgttgttgattatcgacggcgttgaagccgacgacgtgattggtacgctggcctcc
caagcggtgcaacatcagcaagatgtcgtgatctccaccggcgataaagacatggcgcaa
ttggttaatgagcacgtcgctctgatcaataccatgaccgatacctttatggatatcgaa
ggcgtaaaaacaaagttcggcgtgccgcccgaacacatcatcgactatctggcgctgatg
ggcgacaaagtcgataacatccctggggtaccgaaagtcggtgaaaaaaccgccgttggc
ttagtcgctggtttgggcagcttagaggatatctacgccaatctcgataaagtcgcgacc
cttgatttccgtggtgcgaaaaccttagcgccgaagctggaagaacataaagagcaagct
tttctatcgaaggaactggccaccattaagtgcgatgttgaactcgaatttgcgctgccg
gacttcaaaaacagcgacgaacacaaagaagatctgctcgccctgtatcgtgatttagaa
ttcaaagcttggatcgccgaactcagcagtgatccagatcttgatgtcacgacaacaaat
gcaaaaagtacggcgagccgtgccagcaaaggcaaaccaaccgaagccgcagaggtcatt
accgatgtcatgccagacgcgcttgaaggccactatgaaatcatccttgagcaagccgct
ttagatgcttggattgcccagctaaaagccagctcactgtttgcctttgatactgaaacc
acctcgcttaactataaagaagcggaaattgtcggcgtctcttttgccgttgagatcggc
aaagcggcatatgtgccactcgcccatgactacgacgacgcaccacaacaactcgatcgc
gctgcagtattggcacagttaaaaccgttactagaagataagaatcaaaagaaagtcggc
caacacataaagtacgacgctcatgtgctcgccaactacggcatccaattgcaaggtgtt
gagtttgatacgcaacttgagtcctatgtgttggattcggttggcaccaagcacgatatg
gacagcctctcactcaagtaccttggccacaaaaccattacctacgaagaagtcgcgggt
aaaggtgccaaacaaattggctttaatgaagtcgctattgatgtcgccggcccctacgcc
gccgaagacgccgatatcactctgcgcttacaccaagtgctgtgggcaaaactgcaacag
cagcctagtcttgccaaggtattcaccgatatcgaaatgcccgtaatgccggtgctgtgc
gccatggaagaaatcggcaccatcattgatgccgatatgctgcacgagcaaagccagcaa
atagagcaacgcctgcaacagttagaacaagaagcccacaatttagcgggcaaggttttc
aaccttggttcgcccaagcaactcggcgtgattttgtttgaggagcagggcttgccggtc
ttaaagaaaacgcctaaaggcgccccttcaaccgctgaagaagtgctggcggaactggcc
gaagactacgaactgccgcgcgtcattaccgagcatcgtggcttagccaaattaaaaaat
acctacaccgacaaactgccgatgatggtgaatgcaaaaacaggccgcattcatacatcg
tacaaccagaccattgctgccaccggtcgtttgtcgtcgaccgatcccaatttgcagaac
attccgatccgttcagaagaaggtcgccgcatccgccaagcttttatcgccgcacccggt
tacaagctggtggctgccgactacagccaaatcgaactgcgcatcatggcgcatctgtcc
ggtgatgaaggcctgcttagcgcttttgcagaagagcgtgacgttcaccgcgccacagca
gccgaagtatttggcgtcagtgaagcagaagtgaccgacaatcagcgtcgcagcgccaaa
gccattaactttggtttgatttatggcatgtctgccttcggtttagctaagcagttaggc
attggccgtggtgaagctcaagactatgtgaacctctacttccagcgctatcctggggta
aaagactacatggacaacacccgcgagcaagccaaagaccaaggttatgttgaaaccatt
tatggccgccgcctgtacttacctgacatcaaggccagtaacgccgcacggcgccaacat
gccgaacgcactgcaattaatgcccccatgcaaggcagtgctgccgacatcatcaagcgc
gccatgattcgtgtcgccgattggctgcccgacagtggctttgacgcgcgcatgctgctg
caagtgcacgatgaattgattttggaagtacgcgccgatcaagcggaagccctcgctacc
gagctgaaaacacaaatgcagtgtgccgccgcgttaaaggtgccgttattagtagaagca
gggattggcgataactgggaacaggcgcactga
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