Thalassolituus oleivorans R6-15: R615_00960
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Entry
R615_00960 CDS
T03056
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
R615_00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_00960
Enzymes [BR:
tor01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
R615_00960
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
R615_00960
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
R615_00960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AHK14729
LinkDB
All DBs
Position
201300..202109
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETTLRGIEPYLRNVRIERVIVRQPQLRWLIDDNIQLLVGQTVRGLTRRAKYIL
VETDVGTAIWHLGMSGSLRLVTPTDEPAKHDHVDWVLSNGKVLRYHDPRRFGALLWVLPG
EDSTHLSHLGPEPLTDAFDGDYLFARSRGKSQAIKTFIMDGKVVVGVGNIYANESLFLAG
IRPTLAAGKVSKARYNELSVIIKDVLGAAIKQGGTTLRDFVGGDGKPGYFAQQLRVYGRG
GEECKVCKSLLKEIRQGQRATVFCPQCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaaaccaccctgcggggtattgagccttatctccgcaat
gtgcggattgagcgcgtgatcgtgcgtcagccgcagttgcgctggctaatagatgacaat
attcagctattggttgggcagactgtgcgtggattaacgcgtcgagccaaatacatcttg
gttgaaacggatgttggcaccgcaatctggcatttgggtatgtcgggttcgctgcgctta
gtaacccctactgatgaaccagcaaagcatgatcatgtcgactgggtgctgagtaatggc
aaagtgttgcgttatcacgaccctcggcgctttggtgcgctgttatgggttttaccaggt
gaagacagtacgcatctgagtcacctaggcccagagccgctaacagatgcctttgatggc
gattatctatttgctcgcagtcgtggcaaaagccaagcgattaaaaccttcattatggat
ggcaaggtggtggttggcgtgggcaatatctatgcaaatgaaagtctattccttgctgga
atacgaccaactttggcggcagggaaggtgagtaaagcgcgctacaacgagttgtctgtg
attatcaaagatgtgcttggtgctgcgattaaacaaggtggtacaaccttgcgcgacttt
gttggtggcgatggtaagccgggatattttgctcagcagctgcgcgtatatggccgtgga
ggcgaagaatgtaaggtgtgcaaaagcctattaaaagagattcgccaagggcagcgagcc
accgttttttgcccgcaatgtcagcgttaa
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