Thalassolituus oleivorans R6-15: R615_04070
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Entry
R615_04070 CDS
T03056
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R615_04070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tor03019
]
R615_04070
03016 Transfer RNA biogenesis [BR:
tor03016
]
R615_04070
Enzymes [BR:
tor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
R615_04070
Messenger RNA biogenesis [BR:
tor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R615_04070
Transfer RNA biogenesis [BR:
tor03016
]
Prokaryotic type
tRNA degradation factors
R615_04070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
S1_RRP5
KH_2
S1_2
EFP
Motif
Other DBs
NCBI-ProteinID:
AHK15163
LinkDB
All DBs
Position
879080..881182
Genome browser
AA seq
700 aa
AA seq
DB search
MSNKPVANIKTFEFGGQTVTLETGRIARQADGAVLASIGKTQVLAAVVAAKSTKPGQDFF
PLSVHYQEKMYAAGRIPGGYLKREARPSEKETLTSRLIDRPIRPLFPDGFMNEVQVILTV
MASEKDVDPDICAMIAASAALSISGVPFNGPIAGARVGFVEDQGYMLNPTYSQLEDSLLD
MVVAGTKDAVLMVESEADELTEDEMLGAVLFAHNAFQPAITAIAEWTAELNVQRWDWTAE
AKNMPLYDAVKAQTAAAISEAYTISDKMARYGKLDEIKKEAVAKLAAAEGEEGFSADEIA
DMIGELKYEIVRQRSVDGHPRIDGRDNDTVRGLTIETGVLNTTHGSALFTRGETQAIVTT
TLGSSRDAQMIDFLHGTKTDPFLFHYNFPSYSVGECGRMSPPGRREIGHGRLARRGIQAM
MPSHDEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPIKAPVAGIAMGLIKEGEK
FAVLTDILGDEDHLGDMDFKVAGTDEGITALQMDIKIEGITEQIMEIALEKAKAARLTIL
EQMNAVIAEPRTELSANAPTMSAMRVPSDKIRDVIGKGGATIRDITEKTGASVDISDDGS
IKIFAADKASADAAIAMIQAITAEIEVGVTYEGKVSKIVDFGAFITVLPGKDGLLHISQI
SEDRVENVADFLTEGQMVKVHVMDVDPKGRVKLTMKGVEQ
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacaaacctgtcgcaaacattaaaacattcgaattcggcggtcagaccgtcacg
ctagaaactggtcgtatcgcccgtcaagcagatggcgcagtattggcaagcatcggtaag
acccaagtattagctgctgttgttgcagcaaaatcgaccaaacctggtcaagattttttc
cctctttctgttcactaccaagaaaaaatgtacgccgctggccgtattcctggtggttac
ctcaagcgtgaagcgcgtccatcagaaaaagaaactctgacttctcgtttgatcgaccgt
ccaattcgtccactgttcccagacggtttcatgaacgaagttcaggttatcctgactgtt
atggcctctgaaaaagacgttgatccagatatctgtgccatgattgctgcgtctgccgca
ctgtctatttctggtgtacctttcaatggtcctatcgctggtgcgcgtgttggcttcgtt
gaagatcaaggctacatgttgaacccaacatacagccagctagaagattcattgttagac
atggttgtagccggtactaaagacgccgtattgatggtggaatctgaagccgacgaattg
actgaagacgaaatgctaggcgcagtattgttcgctcataatgcattccagcctgccatt
acagcgattgctgagtggactgctgaattgaatgtacagcgttgggattggactgcagaa
gctaaaaacatgccgttgtatgacgctgttaaagcgcaaactgctgctgcaatcagcgaa
gcctatactatctctgacaagatggcgcgttacggcaagctagatgaaattaagaaagaa
gccgttgctaaattagcagcagctgaaggcgaagaaggtttctctgcggatgaaatcgcc
gacatgattggcgaattaaagtacgaaatcgtacgtcaacgtagcgttgatggtcatcca
cgtatcgacggtcgtgacaacgatactgttcgtggtttaaccatcgagaccggtgttctt
aacaccactcacggttctgctttgttcactcgtggtgaaactcaggcgatcgttacgacg
actcttggctcttcacgcgatgcgcagatgatcgacttcttgcatggtactaagactgat
ccattcttgttccactacaacttcccttcttactcagtgggtgagtgtggtcgtatgagc
cctccgggtcgtcgtgaaattggtcacggtcgcttggctcgtcgtggtattcaagccatg
atgccgtcacatgatgagttcccgtacactattcgtgtggtatctgagatcactgagtcg
aacggttcgtcttcaatggcgtctgtttgtggtgcatctttggctctgatggatgctggt
gttccaatcaaagcccctgttgctggtatcgctatgggtctgatcaaagaaggcgagaag
ttcgctgttcttaccgacatcttgggtgacgaagatcaccttggtgatatggactttaaa
gttgccggtacagatgaaggtatcactgcattgcagatggatatcaagatcgaaggtatc
actgaacagattatggaaatcgctctagaaaaagcaaaagcggcgcgtttgaccatcctt
gagcaaatgaatgcggttattgctgagcctcgcacagaattgtctgccaacgcaccgacg
atgtcggcaatgcgtgtaccatcagacaaaatccgtgacgtgattggtaaaggtggtgcg
actattcgtgatatcaccgagaaaaccggtgcatcagttgatatcagcgatgacggctct
attaaaatcttcgcagcggataaagctagcgcagatgccgctattgctatgatccaagcg
atcacggctgaaatcgaagtcggcgttacttacgaaggtaaagtaagcaagatcgttgat
ttcggtgctttcattaccgtacttccaggtaaagacggtttgctgcacatctctcagatc
agtgaagatcgcgtagagaacgtggctgacttcttaactgaaggccaaatggtaaaagtt
catgtaatggacgttgatccaaaaggtcgtgttaagttgaccatgaaaggtgttgaacaa
taa
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