Thalassolituus oleivorans R6-15: R615_04340
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Entry
R615_04340 CDS
T03056
Name
(GenBank) helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03420
Nucleotide excision repair
tor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R615_04340
03430 Mismatch repair
R615_04340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_04340
Enzymes [BR:
tor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R615_04340
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
R615_04340
MMR (mismatch excision repair)
Other MMR factors
R615_04340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
Med9
AAA_30
AAA_12
Hemocyanin_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
AHK15211
LinkDB
All DBs
Position
939944..942292
Genome browser
AA seq
782 aa
AA seq
DB search
MSQHLPPQNVSNASGLTPQQQAVVAHVQGHARVVAVAGAGKTTTLAHFIQARVAQGVPLR
RILVLMYNKAAQVEFQAKLKHVMPNQPIPDIRTFHSLGLRLYQKLIERGALPAFQGKPLS
DGEMEPMVWRLLQQLADDETKQDILSQRKKWVEPALSFIDLVKSGFLPPADVFDSLDLPP
QCRIFIELFYQFEDWRKQNRRISFADMIYDPVMCFRAHPEIADIFAGHMQWILVDEYQDI
NDIQQNLLRVLHGGRGSVMVIGDPDQTIYEFRGSRPEFIVEQFDREMGDVTCYQLPHTFR
YGHRLSLMANHLIHHNNEREPVLCLSHVSTPNTRVQLHHARYEPALTLTLIQEEAKQRPL
EDIAVINRLWALCAPVELALLAAGIPYQLDNAQSVLERWELRIFWLLLEIASGEFNRRDY
AAREEAWLHVLTTPYPKIKRQVLEDLARHLAQVDNNLGEAMFRAIPDSLSQWQKQQLEAR
AQVLANAEVGKLSAYRLLKDYVDLTEFEQGIEDSAFSAQQIEDRLQTIRAFLRFIRELDK
SSEDTLAYLRELRQQRREQRQATGVLLTSIHKSKGREWPVVIIPGLNAHYYPYAPEGEFT
TAASEESERRLLYVAMTRAREQLHLLAPAPSAKPARDTTSRDWPSRFDREMAVERCLTLM
KTLEQGGGEIELNPQFGALADWVPQYLEHLSSSGMATSELKFTMAAPKPNTQRSSVRPPA
NGGVVDQKFPGKQGVTRVTHDSLGTGVLISQDDQYVKIRFDGEQGVRTLSRDVAADYLKF
HF
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
gtgtctcagcacctaccacctcaaaacgtctctaatgccagcggtttaacgccgcagcag
caggctgttgtggcccatgttcaaggccatgctcgggttgtggctgtcgctggagcgggc
aagacgacgacgttagctcactttattcaagctagagtcgcacagggtgtgccgctgcgg
cgtatcttagtgctgatgtataacaaggcggcgcaggttgagtttcaagccaagcttaag
cacgtcatgcccaatcagccgattcccgatatccgtacctttcattccctcgggttgcgc
ttgtatcaaaaattgatagagcgcggtgccttaccagcatttcagggtaagccgctatcc
gatggtgaaatggaacctatggtttggcggttgttgcagcaactggccgatgacgaaacc
aaacaagatattctgtcgcagcgtaaaaaatgggtagaaccagcgctcagtttcattgat
ttagtaaaatcgggtttcttgccgccagctgatgtcttcgatagcttagatttaccgccg
cagtgtcgtattttcatcgagctgttttatcaatttgaagactggcgtaaacagaaccgc
cgtattagttttgccgacatgatttacgacccagtgatgtgtttccgcgctcatcccgaa
atcgccgatatttttgccggtcatatgcagtggatcttagtggatgagtatcaagacatt
aatgatattcagcaaaacctattgcgcgtattacacggtggtcgtggctcggtcatggtg
atcggtgaccctgatcaaaccatttatgaattccgtggctctcgcccagagtttattgtt
gagcagtttgatcgcgaaatgggcgatgtaacttgctatcagttaccgcatacctttcgt
tatggtcatcgcttaagtttaatggcgaaccatttgattcatcacaacaatgaacgtgag
ccggtattgtgtttgtctcatgtttcaacgccaaatacgcgcgtgcaattgcatcatgcg
cgctacgagccggcgctgacgctaactcttattcaagaggaagccaagcagcgaccacta
gaagatattgccgttatcaatcgcttatgggccttatgtgcgccagtagaactagcttta
ctggcggccggtattccttatcagttagataatgctcagtcggtattagaacgctgggaa
ttacgtattttttggttattgttagaaattgcgtcaggcgaatttaatcgccgtgattat
gccgcgcgtgaagaagcctggttgcatgttctcaccacgccgtatccgaaaataaaacgt
caggtattggaagatttagcacgacatttagcgcaagtagataacaacttgggcgaggcc
atgtttcgcgctattcccgattcactcagccaatggcaaaaacagcaattagaggcgcgt
gcgcaggtattagccaatgccgaagtcggcaaattatcggcttatcgcttattaaaagat
tacgtcgatttaactgagtttgaacaaggtatcgaagatagcgcattttcggcacagcaa
attgaagatcgattacagaccattcgcgcatttttacgttttattcgtgaactggataaa
agcagtgaggacaccttggcgtatttacgtgaattacgccagcagcgtcgagaacagcgc
caagctactggagtgctacttacatcaatccataagagtaaggggcgtgaatggcccgtg
gtaattattccaggattaaatgcccactattacccctatgcgccggaaggcgagttcaca
acggccgctagtgaagaaagcgagcggcgattgttgtatgtggctatgactagagcgcga
gaacagctgcatttgctggcgccagcgccatccgcaaaacccgcacgtgataccacctcg
cgtgattggcctagtcgttttgatcgagaaatggccgtggaacgctgcttaaccttgatg
aaaacactagagcagggcggtggtgaaatcgaactgaacccgcaattcggtgcgcttgcg
gattgggtgccacaatacctagagcatttatcaagcagcggtatggcgacaagtgagctt
aaattcacgatggctgcgcctaagcctaatacccagcgttcctccgttcgtccgccggct
aatggtggcgttgtcgatcagaaatttcctggtaagcaaggggtgacgcgagtcactcac
gattcgttaggtacgggcgttttaatatctcaagacgatcaatatgtgaaaattcgcttc
gacggtgagcagggggtgcgcaccctaagtcgagatgtggcagctgattatttgaaattt
catttctaa
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