Thalassolituus oleivorans R6-15: R615_07260
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Entry
R615_07260 CDS
T03056
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R615_07260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_07260
Enzymes [BR:
tor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R615_07260
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R615_07260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHK15635
LinkDB
All DBs
Position
complement(1539270..1542722)
Genome browser
AA seq
1150 aa
AA seq
DB search
MVSPLSPEIHNRAAERRFWGSLQGASQALAIAAAAQQQAGLTLVITTDTGSALRLEEEIR
FFAPHLPVLHFPDWEILPYDVFSPHQDIVSQRIATLSKLHDLKQGVLIVPVTTLLHRLPP
NSFYQGQSFVLDVGGNFDPEHTRRQLEIAGYHCVDTVYEHGEFAVRGAIMDIYPMGQELP
FRVDLVDNEIDSLRTFDPESQRTIDKVDAIRILPAREFPLNTAAIRTFKARWFDFFEHDP
KACPVFTDVTQGIAPAGVEYYLPLFFSDDLGNIFDHLPKNTLIIHDARLEEAASQFRIDV
EQRYESRRYDRLRPILAPAELFLATNQLFEKLNDYPQIQWFLEGAPKRSGAIDFDTQALP
DVSVDSRLEQPLQRLQTWLSNTNGRVLFCVESAGRREALRELLGRIHIHPQDVVEWQEFI
DGDEPLGLIIGPLEQGAQIGDDLFVVTENQLFGQRIQQRRRRQKQKTDSELVVRDLSELK
EGAPVVHLDHGVGRYMGLQILDAGGQVNEFLLLEYANGDKLYVPVSALHLIARYGGAEHE
HAPLNKLGTDKWSQAKRKAAEKIRDTAAELLDIYARRQARKGFAFTEPDDDYKRFSAGFP
YEETPDQQTAIDAVISDMTDIRPMDRLVCGDVGFGKTEVAMRAAFLAVQSGKQVAVLVPT
TLLAQQHYQNFADRFAEWPVKVDVLSRFNSAKETQAALERMVEGKTDIVVGTHKLLQKDV
KFEHLGLLIIDEEHRFGVTQKERIKSLRSEVDILTLTATPIPRTLNMAMASIRDLSIIAT
PPAKRLSVKTFVRQSDNATIKEAVLREILRGGQVYYLHNEVKTIEKVARDLAESIPETRV
GIAHGQMSERELESVMSDFYHKRFNMLVCTTIIETGIDIPSANTIIIDRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPVDRKVTKDAEKRLEAISAAQDLGAGFMLATHDLEIRGAGEL
LGDEQSGQIEAIGFTLYMEMLEQAVKAIRSGKEPSVDLSMPHGAEVNMYTPALIPGDYLP
DVNSRLTLYKRIASATDDHQLKELQVEMIDRFGLLPEPAKQLFRVTSLKLRLTPLGIVRL
DASASQGKIEFGSETSINPFVLIKLVQTRSASFRLEDGHTLRFFFPMDTIESRFKTVDQI
LTDLQKDPNS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtccactcagccctgaaattcataatcgcgctgccgagcgtcggttctggggg
agtttgcagggcgccagccaagcattagccatagccgccgcagcacagcaacaggctggt
ctaacactggtaattactaccgataccggtagcgccttgcgccttgaagaagaaattcgt
ttcttcgctccgcatctacctgttctgcatttccccgattgggagatcttgccgtacgac
gttttctcgccacaccaagacatcgtctcccagcgcatcgccacactgagtaagctgcat
gatctaaaacaaggggtactcattgttccagtcaccaccctgcttcatcgcttaccacct
aatagcttttatcaagggcagagttttgttttagatgtcggtggtaattttgatcctgag
catacccgtcgccaactcgaaatcgcgggctatcactgtgtcgataccgtttatgagcac
ggtgagtttgcagttcgtggtgccattatggatatttatccaatgggccaagagctacct
ttccgtgtcgatctcgtcgacaacgaaattgattcgctgcgaacgttcgacccagaaagc
cagcgcacaatcgacaaggtggatgccatacgtattttgcccgcgcgtgaatttccatta
aacacggcggctattcgtacctttaaagcgcgctggtttgattttttcgaacatgaccct
aaagcgtgccccgtctttaccgatgtcactcaaggtattgcaccagccggtgtcgaatat
tacttaccactattttttagcgatgatcttggcaatatttttgatcatttaccgaaaaat
acgctgattattcacgatgctcgtttagaagaagcagcaagccaatttcgtatagacgtt
gaacaacgctatgaaagtcggcgctatgatcgcttgcgccctattctggcgcccgctgaa
ttatttttagcgaccaaccaactatttgaaaaactcaacgactacccacaaattcagtgg
tttttagagggtgcgccaaaacgctcgggcgctatcgacttcgatacccaagcactgccc
gatgtcagtgttgattcacgcttagagcaaccgctgcagcgcttgcaaacttggttaagc
aacaccaatggtcgggttttattttgcgtagagtccgccgggagacgtgaagcgctgcgc
gaactgttaggccgcattcatattcatccgcaagatgtcgttgagtggcaagagtttatc
gacggcgacgaaccgctaggtttaattattgggccattagaacaaggcgcacaaattggt
gacgatttattcgttgttaccgaaaatcaattatttggccaacgcattcaacaacgtcgt
cgccgacaaaagcagaaaactgatagcgaattagtcgttcgtgatttatcggaattaaaa
gaaggcgcccccgtcgtccatttggatcacggcgttggtcgttatatgggcctacaaatt
ctcgacgctggcggccaagttaacgaatttttattactggaatatgctaacggcgacaaa
ttgtatgttcctgtttctgccttgcatttaatcgctcgctacggtggtgcagaacatgaa
catgcgccgttaaataaattaggcaccgataaatggagccaagcgaagcgtaaagccgcc
gaaaaaatccgcgatacggcagccgagttattggatatttacgcgcgtcgccaagcgcgt
aaaggctttgcatttaccgaacccgatgacgattacaaacgcttctccgcgggcttccca
tacgaagaaacacccgaccagcaaactgcaattgatgccgtgattagcgacatgactgat
attcgtcctatggatcgcctagtgtgtggcgatgtgggctttggtaaaacagaagtcgct
atgcgcgccgcatttttagccgtacaaagtggtaaacaggttgctgtattagtccccacg
accctgctagcgcagcagcactatcagaactttgctgaccgctttgctgaatggccagta
aaagtggatgtgctttcgcgctttaattccgccaaagaaacccaagccgcgcttgaacgt
atggtggaaggtaaaaccgatatcgttgtcggcacgcataaattactgcaaaaagatgtg
aagtttgaacatctcggattattgattattgatgaagagcaccgctttggtgtaacgcaa
aaagagcgtattaaatcgcttcgctccgaagtcgatattcttacgttaacagcaacgcct
attccacgtactttaaatatggcgatggcgagtattcgcgatttatcgataattgccaca
ccgccagcgaaacgattaagtgttaaaacctttgttcgtcaaagcgataacgccaccatt
aaagaagcggtactgcgtgaaatattacgtggcggccaagtgtattatttacacaacgaa
gtaaaaaccatcgaaaaagtagcccgggatttagcagaatcgattcccgaaacccgcgtt
ggcattgctcatggacaaatgtcagaacgcgaactagaaagcgtgatgagcgacttctac
cacaaacgcttcaatatgttggtatgtaccaccattattgaaacgggtatcgatattcca
tcggccaacaccattattattgatcgcgccgataaatttggtttagcgcagctgcaccag
ttgcgaggccgtgttggccgttctcaccatcaagcctatgcgtatttactcacgccagta
gatcgtaaggttactaaggacgcggaaaaacgcttagaggcgatttcagcagctcaagat
ttaggcgcaggctttatgctggctacccacgatttggaaatccgtggtgcgggtgaattg
ttaggtgacgaacagagcgggcagattgaagccattggctttactctctatatggaaatg
ctagaacaagccgtaaaagccattcgttcgggcaaagaaccttccgtcgacttatccatg
ccacatggcgccgaagttaatatgtataccccagcgttaatcccaggcgactatctaccc
gatgtaaacagccgcttaaccctgtataaacgtatcgccagtgcgaccgatgatcatcag
ctgaaagagctgcaagtagagatgatcgaccgttttggtttgctaccagagccagcgaag
caactatttagagttacatcactcaaattgcgtttaacaccattaggcatcgtgcgtttg
gacgcctctgccagccaaggtaagatcgaatttggtagtgaaacctcgatcaacccgttt
gtgttgattaaactagtgcaaacacgctcggccagtttccgacttgaagatggacatacc
ttgcgtttcttcttcccaatggacactatcgaaagtcgattcaaaaccgtcgaccagatt
cttaccgacctgcaaaaggaccctaattcgtga
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