Thalassolituus oleivorans R6-15: R615_09605
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Entry
R615_09605 CDS
T03056
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tor
Thalassolituus oleivorans R6-15
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tor03016
]
R615_09605
Enzymes [BR:
tor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
R615_09605
Transfer RNA biogenesis [BR:
tor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R615_09605
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AHK15982
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All DBs
Position
complement(2037255..2038427)
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AA seq
390 aa
AA seq
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MSRLDIPEPLWIADHDALTDACRQWLTEDYLAVDTEFVRTTTFYPQAGLIQIAGEKGCYL
IDPLLIKDWTPFVEVLQAPTVLKVFHACAEDLEVCRRLTGVIPRPLADSQLGIALAGHGG
SMGFQRAVMALLEIDLPKEETRSNWLHRPLRPEQVDYAVADVHYLYQLYPVLRQQLRDLG
REEWLAEDCTRLLDASDQIDDSYLALYRKVKLAWKLRPQEQYILQQLTVWREQEARNRDV
PRNKVVDDNSLWNIARFKAKNRDQLVKAGVKPPIVRDAGNILLKIVETAMTKDEAFWPEQ
LDRPLSPIAAQSMKDLKDAVTLTAEQLNIPTELLANKRALEFVVRSGYHDGQYQLPEVLS
GWRKDVIGQTLLLMMTQGVAASKVEKSNHE
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccttgatataccggagccactgtggattgcagatcacgacgctctgactgat
gcctgtcgacaatggctgacagaagactacctagccgttgataccgaatttgtaagaacg
acgacgttttatccgcaagcgggtttaattcaaatagcgggagagaagggttgttacctt
attgaccctttattgatcaaggattggaccccgtttgttgaggtattgcaggcgcctact
gtactgaaagtatttcacgcgtgcgccgaagatttagaagtttgtcgacgtttgaccggc
gttattccgcgcccattggcggacagtcaactaggcatagcactagcggggcatgggggc
tctatgggcttccagcgcgcagtgatggcgttgctagagattgatctacccaaagaagaa
acgcgctccaactggttgcatcgtcctctgcgtccagagcaagtagattatgcggtggca
gatgttcattacttgtatcagttgtaccccgtattgcgtcagcagttgcgagatcttggg
cgagaagagtggctagcggaagattgtacgcgtttactcgacgcatctgatcagattgat
gattcgtatctagccttgtatcgcaaggttaagttggcttggaagttgcgcccgcaagag
caatatatattgcagcaactgactgtatggcgcgaacaagaagcacgtaatcgtgatgtt
ccacgaaataaggttgtcgatgataattcactgtggaatatcgcgcgttttaaggctaaa
aatcgcgatcaattggtgaaggcaggtgttaagccgccgatcgttcgtgacgctggcaat
attttgttgaaaattgtcgaaacggcgatgactaaagatgaggccttttggccagagcag
cttgatcgtcccttatctccgatcgccgcgcaatcgatgaaagatctaaaagatgccgtg
acgctcacggccgagcagctcaatataccgactgagctgttggctaacaaacgcgcactt
gaatttgtagtgcgctctgggtatcacgacggtcaataccagcttcccgaagtgttaagt
gggtggcgtaaggatgtaattggccaaactttattgttaatgatgacgcagggtgtagct
gcgagcaaagtggaaaaaagcaatcatgagtaa
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