Thalassolituus oleivorans R6-15: R615_12380
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Entry
R615_12380 CDS
T03056
Name
(GenBank) 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tor
Thalassolituus oleivorans R6-15
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tor03016
]
R615_12380
Enzymes [BR:
tor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
R615_12380
Transfer RNA biogenesis [BR:
tor03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R615_12380
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GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
Pep_deformylase
CSD
Motif
Other DBs
NCBI-ProteinID:
AHK16381
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All DBs
Position
2657213..2659144
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AA seq
643 aa
AA seq
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MLDKNALSQLKSLKQEIQQSTPRFEGTVRATAGRFGFVNTEDGQSFFLSPEEMEKVLPGD
VVAFRVEPAGEGKEQAIVESLISTVQNEFLGRYVVRGKGHFVEADHPTLNRWIFVPPAKR
LQAKDGDLVKAHISQHPFPKGKAQADLDAVIGNDQTPHIERLFVQQKFGLSDAISDAAQA
QVDALCAQGVDTIANERSDLTHLPFVTIDSAGTRDIDDALYAEAQSNGWTLWIAIADPAA
LIEPGTPLDELAKTRATSAYFPDQVLPMLPPALSEQLCSLQAGELRLAMVVELRLSQDGD
VRQTTLHNAIIKSRAKLTYNQVSHLIAGECDEIAAELQGPVLHLSDCAKALAANRLRNCL
VMEDRPDFKLLVDEDGHVTDIVRIERNDAHRLVEECMLVCNRSVALWLKERNAGMFIEHA
GVRSERIGEVAALLRENLALEAKPKFDNLEEYVQLMQQAAEAECELPLRAIIGRQQERSR
FGLEGKPHMGLGFPCYTTFTSPLRKYNDLMIHRTVRALLNGENIEQASQELLDAVQQAQT
SARIAANQTEQWMKLVWLNAKDKDAVYNATIVHMNSSSITVRLNDNGIEGTIDRRKVKGD
WTFDSKTFTHRNAEQCFMLGQALNVRINEVRPYNRQVTFVIVE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcttgataaaaacgcactatcccagctgaagtctctgaagcaggaaatccaacaaagc
acccctcgattcgaaggtactgttcgcgccactgcgggacgtttcggttttgtgaatacc
gaggatggtcaaagtttctttttatcccccgaagagatggaaaaagtattgccgggagat
gttgttgcatttcgcgtggaaccggcaggcgaaggtaaagaacaagccatcgttgaaagc
ttaatcagcacagttcaaaacgaatttttaggacgctatgtcgttcgcggtaaaggacat
tttgtcgaagctgatcatccaacactaaatcgttggatatttgtaccacccgccaaacgc
ttacaagcaaaagacggcgatcttgttaaagcacatatcagccagcatccatttccgaaa
ggtaaagcccaagccgatttagatgcggttattggtaacgatcaaacaccgcatatcgaa
cgcttatttgtgcagcagaagtttggcctcagtgatgccatctccgatgcagcccaagca
caagtagacgcgttatgcgcccaaggcgttgatacgattgccaatgagcgcagcgattta
acccacctaccgtttgtgaccatcgactcagcaggaacgcgcgacatagatgatgccttg
tacgctgaagcgcaaagcaacggctggacattatggattgctatcgccgatccagcagca
cttatcgagccgggaacgccacttgatgaattagcaaaaacacgtgcaacatcggcgtac
tttcctgatcaagtactgccaatgctgccacccgcattatcagagcaattgtgctcattg
caagctggcgagctgcgcttggctatggtggttgaattacgcttgagccaagatggcgat
gtgcgtcaaacaaccttacacaacgcgattatcaaaagccgagcaaagctgacgtacaac
caagttagccatttaattgctggcgaatgtgatgagattgccgctgaactgcaaggcccg
gtgttacatctatccgactgcgccaaagcactggcagctaaccgcctgcgcaactgcttg
gtgatggaagatcgcccagactttaagctcctggtcgatgaagatggccatgtaaccgat
atcgttcgtattgagcgcaacgatgcacatcgtttagtcgaagaatgtatgttggtttgc
aatcgctcggtcgccttgtggttgaaagaacgcaacgctggtatgttcatagaacacgca
ggcgttcgtagcgaacgtatcggtgaagtcgccgcgctattacgcgaaaatctagcgctt
gaagccaagccgaaattcgacaacctcgaagaatacgtacaactaatgcaacaagcggcc
gaggctgaatgcgaactaccgttacgcgcgattatcggtcgccaacaagaacgcagccgc
tttggccttgaaggcaagccacacatgggcttgggcttcccttgctataccaccttcacc
tcaccactgcgcaaatacaacgacctgatgattcatcggacagtacgtgctttgcttaat
ggcgaaaatatcgagcaagcatctcaagaattactcgatgccgttcaacaagcacagact
tctgcacggatagcagcaaatcaaaccgaacaatggatgaaacttgtttggttaaatgcg
aaagataaagatgcggtttataacgcgacaattgtgcatatgaatagcagctcaataacg
gtgcgtttaaatgacaatggtatcgaaggcactattgatcgccgtaaagttaaaggtgat
tggacatttgatagcaaaacatttactcatcgcaatgcagagcaatgctttatgcttgga
caagcactcaatgtgcgtattaatgaggttcgcccttataatcgccaagtaacgttcgta
atagtggaataa
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