Thalassolituus oleivorans R6-15: R615_13670
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Entry
R615_13670 CDS
T03056
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03030
DNA replication
tor03430
Mismatch repair
tor03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
R615_13670 (dnaE)
03430 Mismatch repair
R615_13670 (dnaE)
03440 Homologous recombination
R615_13670 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tor03032
]
R615_13670 (dnaE)
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_13670 (dnaE)
Enzymes [BR:
tor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
R615_13670 (dnaE)
DNA replication proteins [BR:
tor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
R615_13670 (dnaE)
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
R615_13670 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AHK16572
LinkDB
All DBs
Position
complement(2941728..2945216)
Genome browser
AA seq
1162 aa
AA seq
DB search
MANRFVHLRVHSEYSLYDSTIRVKKLIGAASANGMPAVALTDQANMYALVKFYKGALGEG
LKPILGADLWLENPDDRHAPFRVAALCMNPDGYLNLRELISRGYAENQHFDKAMLKREWL
LESNQGLILLSGGRDGDVGQRIIKGKVAEAEALVKEYMEVFGDRFYFEVQRTNRQGEDAI
VKAGLAMAARYQVPLVATNDVRFLKRDEYEAHETRVAIGQGFTLGDKRRPREYSEEQYFR
SEDEMIDLFKDIPSAIENTVEIAKRCSVEVLLGKYFLPDYPIPAGMDEADFFRKISKVGL
EDRLEILLDKNDPDYAAKRKPYDERLEFELDIIIQMGFPGYFLIVMDFIQWAKDNRIPVG
PGRGSGAGSLVAYAQKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMEDREKVIAYVA
DNYGREAVSQIVTFGTMAAKAVVRDVARAQGKSFGLADKLSKLIPGDPGMTLEKARSTEA
ALDEFINDDDEAQEIWEMALKLEGIARQTGKHAGGVVIAPTKLTDFSATACEPDGTGLVT
QFDKNDVEEAGLVKFDFLGLRTLTIIDWALETINAKRAEEDLEPIDISLIPLDDADSFTL
LKKAQTTAVFQLESRGMKDLIRRLQPDNIEDLIALVALFRPGPLESGMVDDFINRKHGRA
QVAYPHPDFQHDSLKETLEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEE
MAKQRDTFRDGAVSVGVDPDLAMKIFDLVEKFAGYGFNKSHSAAYAVVSYQTLWLKQHYP
APFMAAVLTSDMQTTDKVVIFVEECREMGLEIVLPDVNQSFFGFTVNKSGAIVYGLGAVK
GVGEGPIDAIIAAREEGGAFKSLFDFCQRVDGKKLNKRVLEALVRCGAFENLELTAPRSV
LMASVEDAIKSAGQSAANEAAGMVDLFGEVQAEEADTTDVYERHRYLRDWTLKERLQGEK
DTLGLYVSGHPFDEYEGEVRQLVPTKLSHLQEQKGPQKLAGLVVDMRLMKNKRGDNMCFV
TLDDRTARVEVALFSDVYDNVREVVGLDKVLVIEAMVSHDNYSGGLKATGRSAMEISQAR
LNYAKALRVRVDGEGADEKFCQRLTGLLQTMENGCPVVLDFHNSVARCDIQLAQRWAINP
TDEQLQELKFAFGDDAVQLVFS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcgatttgtacatctacgcgtacattccgagtattcactctacgacagtacc
attcgcgttaagaagctaattggtgctgcgtcggctaatggtatgcctgccgttgcgctc
accgatcaagccaatatgtatgccttggtgaagttctataaaggtgctttgggtgagggt
ctaaagcctattttaggcgcggatttgtggctcgaaaatccagacgatcgccatgcgcct
tttcgagtagcagccttgtgcatgaaccctgatgggtaccttaacctgcgcgaactgatt
tctcgtggttatgccgagaaccagcattttgataaggccatgctaaaacgtgaatggttg
ttagaaagtaatcaaggtttgattttgctcagcggtggtcgtgacggtgatgtcggtcag
cgtattattaaaggcaaggtggccgaagctgaagcgctggtgaaagaatacatggaggtg
ttcggcgaccgcttctactttgaagtacagcgcaccaaccgccaaggcgaagacgccatt
gttaaggcgggtttagcgatggcagcacgttatcaggtgccattagtggcaaccaatgat
gtgcgttttttaaagcgcgatgaatatgaggcgcacgaaacccgcgtcgctattggtcaa
ggtttcactttaggtgataaacgtcgtccgcgtgaatacagcgaagagcaatacttccgc
tcagaagacgaaatgatcgacctatttaaagacattccgtcggccattgaaaataccgta
gaaattgccaaacgctgttcggttgaagtgctcttaggtaagtactttttgccggattat
ccaattcctgccggcatggacgaagcggatttcttccgtaaaatttctaaggtaggtttg
gaagatcgcttagaaattttgctcgataaaaatgatcctgattacgcggcaaaacgtaaa
ccttacgatgagcgtttagagttcgagctggatattattattcagatgggatttcctggt
tacttcctcatcgtaatggactttattcagtgggcgaaagacaaccgtattccggttggc
cccggccgtggttcgggtgctggctcgctggtggcgtatgcgcaaaaaattaccgaccta
gatccacttgaatacgatttgctgttcgaacgattcttaaaccctgaacgtgtatccatg
cccgatttcgatatcgacttttgcatggaagatcgtgaaaaagtgattgcttacgttgcg
gataactatggtcgcgaagccgtatcgcaaattgtgaccttcggcaccatggctgcgaaa
gcggtggtgcgtgacgtggcgcgtgctcaaggtaaatcgtttggtttagccgataaatta
tccaagctgattcccggtgatccgggcatgacgctagaaaaagcacgcagcaccgaagcc
gcactcgacgagtttattaacgacgatgacgaagcccaagaaatttgggaaatggcgtta
aagcttgaaggtattgcccgtcaaaccggtaaacacgccggtggtgtggtgattgcaccc
acgaaattaaccgacttttctgccaccgcctgcgaacctgatggcaccggtttagttacc
cagtttgataaaaacgatgtggaagaagcgggcttagttaagttcgacttcttgggtctg
cgtaccctcaccattattgattgggcgttagaaaccattaatgctaagcgcgcagaagaa
gatttagagccgattgatatcagcctaattccgctcgacgacgcagactcttttacctta
ctaaaaaaggcgcaaaccacggcggtattccagttggaatcccgtggtatgaaagatctt
attcggcgcttacagccggacaatattgaagacttgatcgccttggtggcactgttccgt
cccggcccattggaatcgggcatggtggacgactttattaaccgtaagcacggtcgtgct
caagttgcttatccccaccccgattttcaacacgacagcttaaaagaaaccttagagcca
acctatggcgttattgtctaccaagaacaggtaatgcaaattgcgcaggtgttggccggt
tacacgcttggcggcgctgacatgctgcgccgtgcgatgggtaagaaaaaacccgaagaa
atggccaagcagcgcgataccttccgcgatggtgctgtgtcggttggggtagatcctgat
ctggccatgaagatcttcgacttggtggaaaagttcgccggttatggttttaacaaatcg
cactcggccgcttatgccgtggtgtcgtatcaaacgctgtggttaaaacagcattaccca
gcgccatttatggcggcggtattaacctccgatatgcaaaccaccgacaaggtggtgatc
ttcgttgaagaatgtcgcgagatgggattagaaatcgtactgcctgatgtgaaccaaagt
ttctttggttttaccgtaaataaatccggtgcgattgtttatggattaggtgcagtgaaa
ggcgtgggcgaaggcccaattgatgccattattgccgcacgtgaagaaggcggagcattt
aaaagtttgttcgatttttgccaacgcgtggacggcaaaaaattgaataaacgcgtgctt
gaagcgttagtgcgttgcggtgcctttgaaaatttagaattaactgcaccgcgctcggta
ttaatggccagcgttgaagatgccattaaaagtgctgggcagtcggctgccaacgaagcc
gcgggtatggtcgatttatttggcgaagtgcaggccgaagaagccgataccaccgacgtt
tatgagcgtcatcgttacctgcgcgactggacgttaaaagagcgtctgcaaggcgaaaaa
gacaccttaggtttatacgtatcgggtcatccgtttgatgaatacgaaggtgaagtgcgc
caattagtgcccaccaaactatcacatctgcaagaacaaaaagggccacaaaaattagcg
ggtttagtggttgatatgcgtttgatgaaaaataaacgcggcgacaatatgtgttttgta
accctagacgatcggaccgcacgggttgaagttgctttgttttctgatgtctacgacaac
gttcgtgaggtggtcggcttagataaggtactcgtcattgaagccatggtaagtcacgac
aactattccggcggtttaaaagcgacgggacgtagcgctatggaaattagccaagcccgt
ttgaattacgctaaagcgttgcgtgtacgcgtggatggcgaaggtgccgacgagaaattc
tgtcagcgtttaaccggtcttttgcaaacgatggaaaacggatgcccagtggtacttgat
ttccataattcggtcgctcgctgcgatattcaattagcgcagcgttgggcaattaatccg
accgatgagcaactgcaagaactgaaatttgcttttggtgatgatgccgttcaactggtg
ttcagttga
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