Thalassolituus oleivorans R6-15: R615_13705
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Entry
R615_13705 CDS
T03056
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R615_13705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tor03019
]
R615_13705
Enzymes [BR:
tor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R615_13705
Messenger RNA biogenesis [BR:
tor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R615_13705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
AAA_22
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AHK16577
LinkDB
All DBs
Position
complement(2950950..2952350)
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AA seq
466 aa
AA seq
DB search
MSEIQFADLGLSESLLKAVAEQGYTIPSPVQAQAIPAVLQGRDVMAAAQTGTGKTAGFTL
PILQRLDNGKRVSGNRIRALILTPTRELAAQIDENIKAYGKYLPLRSAVVFGGVKINPQM
IALRRGVDILVACPGRLLDLYQQNAVRFDEVEFMVLDEADRMLDMGFINDIKKILAKVPA
NRQNLMFSATFSAEIRALAKGLVNNPVEIDVSPRNSTAHNVEQWLVPVDKGSKSKALIEL
VSAGDWHQVLVFTRTKHGANRLTKQLEDAGITAAAIHGNKSQGARTRALADFKSNEIRVL
VATDIAARGLDIDQLPHVVNYELPNVAADYVHRIGRTGRAGASGEALSLVCAEELEDLEG
IEGLIGRTIERRELEGFAPQAPLPLSRPKAPRKPKKPKQSSGSSSAQGERSNSAPRNNSA
PRNNNAPKKPANGKPANRSGQSASKDGAAPSRPRRSQRGPRPSSAS
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaatccaatttgccgatttaggtttatctgaatcgctgcttaaagctgttgcc
gaacaaggctacaccatcccatctccggtccaagctcaggccatacctgccgtattgcag
ggccgtgacgttatggccgcagcacaaacaggtaccggtaaaaccgctggttttacactg
ccaatattacaacgcctagataacggcaaacgggtatcgggtaaccgcatacgtgcctta
attctgacgccaacgcgcgaattagcggctcaaatcgacgaaaatatcaaagcttacggt
aaatacttaccgctacgttcggccgtcgtctttggtggcgtcaagatcaacccacagatg
attgctctgcgccgcggtgttgatattttggttgcctgcccggggcgtttgctcgacttg
tatcagcaaaatgccgttcgtttcgacgaagttgagttcatggtattagatgaagctgat
cgcatgctcgacatgggctttatcaacgacatcaagaagattctcgccaaagtacctgct
aaccgccagaacttaatgttctccgcaacgttttctgctgagattcgcgctctagcaaaa
ggcttagtgaataatcccgtggaaatcgatgtcagcccgcgcaatagcactgcacataat
gttgaacagtggttggtgccggttgataaaggtagtaaatcgaaagccttgattgaattg
gttagtgctggcgattggcatcaagtgttggtgtttactcgtactaagcatggcgcgaat
cgcttaactaaacagctcgaagatgctggcattactgccgcggcgattcacggcaataaa
agccaaggtgctcgtacccgcgcactggcggatttcaagagtaacgaaattcgcgtgtta
gtggcgacggatattgccgcgcgtggtttggatatcgaccaactaccgcatgtagtgaac
tatgaactgccgaacgttgcggcagattatgttcaccgtattggtcgtactggccgtgct
ggtgctagtggcgaagcattatccttggtgtgtgcagaagaattagaagatttagaaggc
attgaaggtttaattggccgcacaattgaacgtcgtgaattagaaggcttcgcgccccag
gcgccgttgcctttgtcgcgccctaaagcaccacgcaagcctaaaaagccgaagcaatcc
tctgggtcgtcatcggcgcagggtgagcgtagtaatagcgcgccgcgtaataactctgct
ccacgtaataacaacgcgccgaaaaaaccagcgaatggcaaacctgccaatcgttctggc
cagtcggcgagcaaagatggcgctgcaccatctcgcccgcgccgctcgcagcgcggaccg
cgtcctagctctgccagctaa
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