Thalassolituus oleivorans R6-15: R615_16210
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Entry
R615_16210 CDS
T03056
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R615_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tor03021
]
R615_16210
03400 DNA repair and recombination proteins [BR:
tor03400
]
R615_16210
Enzymes [BR:
tor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R615_16210
Transcription machinery [BR:
tor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R615_16210
DNA repair and recombination proteins [BR:
tor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R615_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHK16953
LinkDB
All DBs
Position
complement(3481560..3485783)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLVNFLRNQNNADEFDAIRIGLASPAMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVTEPGMTTLEVGQLLSDEQYYEAIEEFGDEFEAKM
GAEAIQMLLGQIDLPEEVQRLREEIPGTTSETKIKKLSKRLKILEAFHNSGNDPQWMIMS
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPQ
LRLHECGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVERETPEVWDILADVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYWMTRDRINAKGEGMMLADLDEVTRAYQTG
AAHLQAKVKVRIKETSIDINGGSETITRVVDTTIGRALLFRIVPDGLSFDLVNQPMKKKA
ISNLINTAYRRVGLKDTVIFADQVMYTGFQFATRSGSSIGVNDFVIPDEKAEIVANADAE
VKEIESQFASGLVTHGEKYNKVIDIWSRANELVAKAMMDNLGKEKVIDRDGNEVDQESFN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDRDCGTEHGLQMTPLIEGGDVVVALGGRIL
GRVIATDVYKPGSVGDIVVPAGTLIDEAWVQKIEAEGIDEVKVRSAITCESRVGICAACY
GRDLGRGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAADSVQVKNNGTVR
LHNLKTVTRDNGNLVAVSRSGSIALADEHGRERELYKLPYGAVISVVDGEKVQAGQKVAS
WDPHTHPIVTEVKGRIEFVGMDEGITINRQTDELTGLSNIEVIDPKDRPAAGKDIRPMVK
LVDASGNDVSLPGTNAPAQYMLPPNALVNHENGTEVSVGDIIARIPQETSGNKDITGGLP
RVADLFEARKPKEPAILAEITGTVSFGKETKGKKRLVITPNDGGDVYEELIHKWRHMNVF
EGEQVEKGEVISDGPMNPHDILRLQGVGQLAMYITNEVQEVYRLQGVGIDDKHIEVIVRQ
MLRKVLIHENGDSSFIPGDQVEYTNYLTENEKLVEAGKIPAKSERVLLGITKASLATESF
ISAASFQETTRVLTEGAVTGKVDNLRGLKENVVVGRLIPAGTGLAYHADRKRKRLNRDNE
RRKALPEGLSVSAEDMEAKLSEAFSDK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttagtcaattttctgcgcaatcagaacaacgctgacgagtttgacgccatc
cgcatcggcctcgcctctccagcaatgattcgctcatggtccttcggtgaagttaaaaag
ccggaaaccattaactatcgtacgttcaagcctgagcgtgatggtttattttgcgcacgc
atctttggtcctattaaggactacgaatgcttgtgtggtaagtacaagcgccttaaacac
cgcggagtaatctgtgagaagtgtggcgttgaagttactcaagccaaagtacgtcgtgag
cgtatgggtcacatcgacctagcgtcaccggttgcacatatttggttcttgaagtcactg
ccatcgcgtatcggcttaatgctggatatgaccctgcgtgacatcgaacgaattctttac
tacgaatcattcgttgtaactgagccaggcatgaccacgcttgaagtgggtcagttgctg
tctgatgaacagtactacgaagcgattgaagaattcggtgatgagttcgaagctaaaatg
ggtgctgaagccatccagatgctattgggccaaatcgatctaccagaagaagttcagcgc
ctgcgtgaagaaattccgggcacgacttctgaaactaagatcaagaagctatcaaagcgt
ctaaaaatacttgaggccttccataattctggaaacgatcctcagtggatgatcatgtct
gtattgccagtattaccaccggatttgcgtccattggtaccactggatggcggtcgtttc
gctacttcggatctaaatgatctgtatcgtcgcgttattaaccgtaacaaccgtctaaag
cgtttgttagagcttagcgctccagacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagatgccctgttggataacggtcgtcgcggtcgtgcgattacgggttctaac
aagcgtcctttgaagtcgctggctgacatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactactcaggccgttcggttattaccgtaggtccgcag
ttgcgtctgcatgagtgtggtctgccgaagaaaatggcacttgaattgttcaagccgttt
atcttcagcaaactagagcaccgcggtttagccacaaccattaaagctgcaaagaaaatg
gttgagcgcgaaacaccagaagtttgggatatcttggctgacgtgattcgcgaacatcca
gtcatgctgaaccgtgcaccaacattgcaccgtttgggtattcaggcgttcgaaccacaa
ttgattgaaggtaaagcgattcagttgcacccacttgtgtgtgcggcatacaacgccgac
ttcgatggtgaccaaatggcggtacacgtaccgttaacaatcgaagcacagctagaagcc
cgtgctctgatgatggccaccaacaacgtattatcgcctgccaacggtgaacctatcatc
gttccttcacaggacgttgtattgggcttgtactggatgactcgtgatcgcatcaacgcg
aaaggtgagggcatgatgctcgccgatcttgatgaagtgactcgtgcttaccagactggc
gctgctcacctgcaagcaaaagttaaagtacgtatcaaagaaacgtctatcgacattaat
ggtggttctgaaaccatcactcgtgttgttgatacgacgattggtcgtgcattgttgttc
cgtattgtgccagacggcttatctttcgacttggttaaccaaccaatgaagaagaaggca
atctcaaacttgattaacacggcgtaccgtcgcgttggtctgaaagatactgttatcttc
gctgaccaagtgatgtataccggcttccagtttgcgactcgttctggttcgtctatcggt
gttaacgatttcgttatcccagatgaaaaagcggaaatcgttgctaacgcggatgcggaa
gtaaaagaaattgaaagccaattcgcttcaggtcttgtgacccacggcgaaaagtacaac
aaggttatcgacatttggtcgcgcgctaacgaattagtagcgaaggcgatgatggataac
ttgggtaaagaaaaggttattgaccgcgacggcaacgaagtggatcaagagtctttcaac
tctgtatacatgatggccgactcaggcgctcgtggtagcccggctcagatccgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagacggttccatcatcgaaacgccaatcgtg
gcgaacttccgtgaaggtttgaacgtacttcagtacttcacctcgactcacggtgctcgt
aaaggtttggccgatacggcattgaagacagctaactccggttatctgactcgtcgtttg
gttgacgtagcccaagatttggttgttaccgaccgtgattgtggcactgagcacggctta
cagatgactccgctaattgaaggcggtgacgttgttgtggcattgggtggtcgtattctt
ggtcgtgttatcgcgactgacgtatacaagccaggcagtgttggcgatatcgtcgtgcca
gcgggtactttgattgatgaagcttgggtacaaaagatcgaagctgaaggtatcgacgaa
gtgaaggtgcgctctgcgattacctgtgaatcacgcgttggtatttgtgcggcttgttac
ggtcgtgaccttggtcgtggtcatcaggttaacgttggtgaagcagtcggcgttatcgct
gctcagtcgatcggtgagcctggtacacagctgacgatgcgtacgttccacattggtggt
gcggcatcacgttcttctgctgctgatagcgttcaagttaagaacaacggtaccgttcgt
ttgcataacttgaaaactgtaacgcgtgataacggcaacctagttgcagtatcgcgttcg
ggttcgattgccttggcagacgaacacggtcgtgagcgtgagctatacaagctgccttac
ggcgcggttatcagtgttgttgacggcgaaaaagtacaagcgggccagaaagtggcaagc
tgggatccacatactcacccaatcgtgaccgaagtaaaaggtcgtatcgaattcgtgggt
atggatgaaggtatcaccatcaaccgtcaaactgacgagttgactggtctatccaacatc
gaagttattgatccaaaagatcgcccagcggcaggtaaagatattcgtccgatggttaag
ctggttgatgcatcaggtaatgacgtttctctgccaggtacaaacgctccagcacaatac
atgctgccgccgaatgccttggttaaccatgagaacggtactgaagtatcggttggtgac
atcatcgcgcgtattccacaagaaacctctggtaacaaggacatcacgggtggtctgcca
cgcgttgctgacttgttcgaagcacgtaagccgaaagagcctgcaattcttgcagagatc
accggtactgtgagcttcggtaaagaaaccaaaggtaagaagcgtttggtaattactccg
aacgatggtggtgacgtttatgaagaactgatccacaagtggcgccacatgaacgtgttc
gaaggtgaacaggttgagaagggtgaggttatttccgatggtccgatgaacccacacgat
atcttgcgtctgcaaggtgtaggtcaattggctatgtacatcactaacgaagtacaggaa
gtttaccgtctacaaggcgttggcatcgatgataaacatatcgaagttatcgttcgtcag
atgttgcgtaaggttctaatccatgaaaatggcgacagctctttcattccgggtgatcag
gtggaatacaccaattacctaactgaaaatgagaagttggtagaagctggcaagattccg
gcgaagagcgagcgcgtgctattgggtattaccaaagcatcgttggcaaccgaatcgttt
atctctgcggcatcgttccaggaaacaactcgtgtactcaccgaaggtgcagtaaccggt
aaagttgataacttgcgcggtctgaaagaaaacgtggttgtgggtcgtttgatccctgct
ggtacaggtttggcttatcacgctgatcgtaagcgtaagcgcctgaatcgcgataacgaa
cgtcgtaaagcattgccagaaggtctcagcgtttcagctgaagacatggaagcaaaactg
agcgaagcgttcagcgataaataa
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