Thalassolituus oleivorans R6-15: R615_16670
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Entry
R615_16670 CDS
T03056
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tor
Thalassolituus oleivorans R6-15
Pathway
tor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R615_16670 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tor03021
]
R615_16670 (rho)
03019 Messenger RNA biogenesis [BR:
tor03019
]
R615_16670 (rho)
Transcription machinery [BR:
tor03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
R615_16670 (rho)
Messenger RNA biogenesis [BR:
tor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
R615_16670 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
NACHT
AAA_25
Mor
OB_RNB
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
AHK17019
LinkDB
All DBs
Position
3586902..3588164
Genome browser
AA seq
420 aa
AA seq
DB search
MNLSDLKLKSVPELLDIAREMNLENVSRTRKQDIIFAVLKHHAKSGEDIYGDGVLEILQD
GFGFLRSANSSYLAGPDDIYVSPSQIRRFNLRKGDKIAGKIRPPKEGERYFAMLKVAEIN
DDKPENAKNKVLFENLTPLFPNERFILETGSGSTEDLSSRVLDLVAPIGKGQRGLIVAPP
KAGKTMLLQTIAQAITRNSPDVELIVLLIDERPEEVTEMKRSVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKRDVVILLDSVTRLARAYNTVIPSSGKVLTGGVDANALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLDRKIAEKRIYPAINI
RRSGTRREDMLFDEAALQRLWILRRLLSEMEDVQGIEFLLDKLRQTKTNDDFFDSMRGGK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttctgatctaaaactgaaatccgttcccgaacttctcgacattgcgcgagaa
atgaatttagagaacgtaagccgtacccgtaaacaagacatcattttcgccgtactgaaa
catcacgctaaaagtggtgaagacatctatggcgacggcgtcctagaaatcctgcaagac
ggtttcggatttctacgtagtgctaacagctcttacttagcagggccggatgatatttat
gtatcaccgagccagattcgtcgctttaacttgcgtaaaggtgacaaaattgccggtaag
atacgtccgccaaaagaaggtgaacgttattttgccatgcttaaagtcgctgaaatcaac
gacgacaagccagaaaacgctaaaaacaaagttctgttcgagaacttaacgccgttattt
ccaaatgagcgcttcatcctagagacaggtagtggctccactgaagatttgtcttcgcgt
gtattggatctagtcgcgccgattggtaaaggccaacgtggtttgatcgtagcaccgccg
aaagccggtaaaaccatgctactgcaaactattgctcaagccatcactcgcaattctcca
gatgttgaattgatcgtacttctaatcgacgaacgtcctgaagaagtaaccgagatgaaa
cgctctgtacgcggcgaagtggttgcatctacgttcgatgagccaccagcacgtcacgtt
caagtggctgaaatggttatcgaaaaagcgaaacgtttggttgaacataagcgtgacgtc
gtgattcttctcgattcagtaacgcgtctagcacgtgcttacaacactgttatcccatcg
tccggtaaagtactgactggtggtgttgatgccaacgcactagaaaaaccaaaacgtttc
tttggtgcggctcgtaatatcgaagaaggcggttcattaaccattattgctacggcattg
gtggataccggctctaagatggatgaagtgatctacgaagaatttaaaggtactggtaac
caagagttgcatcttgatcgtaagatcgctgaaaagcgcatctacccagcgatcaacatt
cgtcgttctggtactcgtcgcgaagacatgctgtttgatgaagcggcattgcaacgctta
tggattctgcgccgtctgctttcagaaatggaagatgtacaaggtatcgagttcttactt
gataagctgcgtcagaccaaaaccaacgatgacttcttcgactccatgcgtggtggcaag
taa
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